miRNA display CGI


Results 1 - 20 of 224 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29417 5' -53.3 NC_006151.1 + 2218 0.66 0.97153
Target:  5'- cUCcACGGCGcCCCCggCGGcGGCGCGg -3'
miRNA:   3'- -AGcUGCUGUuGGGGuaGCUcUUGCGC- -5'
29417 5' -53.3 NC_006151.1 + 2383 0.72 0.793901
Target:  5'- cUCGGcCGGCAGgCCC-UCGGGGcCGCGg -3'
miRNA:   3'- -AGCU-GCUGUUgGGGuAGCUCUuGCGC- -5'
29417 5' -53.3 NC_006151.1 + 2607 0.66 0.97153
Target:  5'- gCGGCGGCAGCgggaCCGgggucCGGGGcccgGCGCGg -3'
miRNA:   3'- aGCUGCUGUUGg---GGUa----GCUCU----UGCGC- -5'
29417 5' -53.3 NC_006151.1 + 3330 0.66 0.97153
Target:  5'- uUCGGgGAaGACCuCCugguccaCGAGGGCGCGg -3'
miRNA:   3'- -AGCUgCUgUUGG-GGua-----GCUCUUGCGC- -5'
29417 5' -53.3 NC_006151.1 + 3385 0.67 0.954669
Target:  5'- gCGGCGAgGGCCgCC-UCGgAGGGcCGCGg -3'
miRNA:   3'- aGCUGCUgUUGG-GGuAGC-UCUU-GCGC- -5'
29417 5' -53.3 NC_006151.1 + 3438 0.7 0.868967
Target:  5'- gCGGCGGaAGCCgCCGUCGGGcGCGgGg -3'
miRNA:   3'- aGCUGCUgUUGG-GGUAGCUCuUGCgC- -5'
29417 5' -53.3 NC_006151.1 + 3682 0.66 0.965438
Target:  5'- -gGGCGGCGGgCCC--CGGGcGCGCGg -3'
miRNA:   3'- agCUGCUGUUgGGGuaGCUCuUGCGC- -5'
29417 5' -53.3 NC_006151.1 + 3969 0.66 0.968589
Target:  5'- cCGcGCGGCGGCCUCggCGAGccggcCGCGg -3'
miRNA:   3'- aGC-UGCUGUUGGGGuaGCUCuu---GCGC- -5'
29417 5' -53.3 NC_006151.1 + 4136 0.68 0.926839
Target:  5'- cUCGGCcgGGcCGGCCCCGgggaucgcgUCGcGGAGCGCGa -3'
miRNA:   3'- -AGCUG--CU-GUUGGGGU---------AGC-UCUUGCGC- -5'
29417 5' -53.3 NC_006151.1 + 4376 0.68 0.926302
Target:  5'- cUCGACGGuCGccuCCCCGgcgCGGGGguccgcgGCGCGg -3'
miRNA:   3'- -AGCUGCU-GUu--GGGGUa--GCUCU-------UGCGC- -5'
29417 5' -53.3 NC_006151.1 + 4700 0.68 0.932078
Target:  5'- cUCGcCGGCGGCCCCGcUGuAGAugagGCGCa -3'
miRNA:   3'- -AGCuGCUGUUGGGGUaGC-UCU----UGCGc -5'
29417 5' -53.3 NC_006151.1 + 5552 0.72 0.775379
Target:  5'- gCGGCGGCGGgCUCGUCGAGcaggggcuCGCGg -3'
miRNA:   3'- aGCUGCUGUUgGGGUAGCUCuu------GCGC- -5'
29417 5' -53.3 NC_006151.1 + 6234 0.66 0.968589
Target:  5'- gCGGCGcCGggagcccuggcuGCCgCCGUCGGGGccggACGCGa -3'
miRNA:   3'- aGCUGCuGU------------UGG-GGUAGCUCU----UGCGC- -5'
29417 5' -53.3 NC_006151.1 + 6861 0.67 0.954669
Target:  5'- gCGGCGGCcaucuuGCCCCAUCGAcGGC-Ca -3'
miRNA:   3'- aGCUGCUGu-----UGGGGUAGCUcUUGcGc -5'
29417 5' -53.3 NC_006151.1 + 10208 0.66 0.976809
Target:  5'- -gGGCGGCGGCUgCAgaggCGGcugcGGACGCGg -3'
miRNA:   3'- agCUGCUGUUGGgGUa---GCU----CUUGCGC- -5'
29417 5' -53.3 NC_006151.1 + 11102 0.67 0.958483
Target:  5'- -gGGCGcuGCGACCCaga-GAGAGCGCc -3'
miRNA:   3'- agCUGC--UGUUGGGguagCUCUUGCGc -5'
29417 5' -53.3 NC_006151.1 + 11882 0.74 0.645667
Target:  5'- gCGGCGAUucgGGCCgCAUCGAG-GCGCGu -3'
miRNA:   3'- aGCUGCUG---UUGGgGUAGCUCuUGCGC- -5'
29417 5' -53.3 NC_006151.1 + 12028 0.66 0.965438
Target:  5'- cCGGCG-CAACCCCGggcccUGAGAGCu-- -3'
miRNA:   3'- aGCUGCuGUUGGGGUa----GCUCUUGcgc -5'
29417 5' -53.3 NC_006151.1 + 14082 0.67 0.958483
Target:  5'- cCGACGGCAcucgccGCCCCAaCGAcgccGACGgGg -3'
miRNA:   3'- aGCUGCUGU------UGGGGUaGCUc---UUGCgC- -5'
29417 5' -53.3 NC_006151.1 + 14151 0.78 0.456271
Target:  5'- cCGACGAgGagccgcGCCCCGcUCGAGGACGCc -3'
miRNA:   3'- aGCUGCUgU------UGGGGU-AGCUCUUGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.