miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29418 3' -65.6 NC_006151.1 + 106799 1.12 0.000293
Target:  5'- cGGCGGCGGUGCUCGUCGGGGCCCCGCu -3'
miRNA:   3'- -CCGCCGCCACGAGCAGCCCCGGGGCG- -5'
29418 3' -65.6 NC_006151.1 + 141643 0.83 0.035547
Target:  5'- cGCGGCGGcGCgg--CGGGGCCCCGCg -3'
miRNA:   3'- cCGCCGCCaCGagcaGCCCCGGGGCG- -5'
29418 3' -65.6 NC_006151.1 + 5553 0.82 0.041397
Target:  5'- cGGCGGCGG-GCUCGUCGagcaGGGgCUCGCg -3'
miRNA:   3'- -CCGCCGCCaCGAGCAGC----CCCgGGGCG- -5'
29418 3' -65.6 NC_006151.1 + 26355 0.8 0.063552
Target:  5'- cGGCGGCGG-GCcgCGUCGGGGCgCgCGUc -3'
miRNA:   3'- -CCGCCGCCaCGa-GCAGCCCCGgG-GCG- -5'
29418 3' -65.6 NC_006151.1 + 54995 0.79 0.075693
Target:  5'- cGGUGaaGGUGCUCGUCGGGcGCaagCCCGCc -3'
miRNA:   3'- -CCGCcgCCACGAGCAGCCC-CG---GGGCG- -5'
29418 3' -65.6 NC_006151.1 + 5658 0.78 0.09004
Target:  5'- cGGCGGCGGgggagGCUgGggaagCGGGcCCCCGCc -3'
miRNA:   3'- -CCGCCGCCa----CGAgCa----GCCCcGGGGCG- -5'
29418 3' -65.6 NC_006151.1 + 130898 0.77 0.099362
Target:  5'- aGGCGGCGGccgucGCcgUCGUCGGuGGCcgggCCCGCg -3'
miRNA:   3'- -CCGCCGCCa----CG--AGCAGCC-CCG----GGGCG- -5'
29418 3' -65.6 NC_006151.1 + 104911 0.77 0.104358
Target:  5'- cGGCGGCGGcGCgcgaccgCGaCGGGGCCCUcgaGCu -3'
miRNA:   3'- -CCGCCGCCaCGa------GCaGCCCCGGGG---CG- -5'
29418 3' -65.6 NC_006151.1 + 3242 0.77 0.106944
Target:  5'- aGGCGGCGcG-GCggCGgagCGGGGCgCCGCg -3'
miRNA:   3'- -CCGCCGC-CaCGa-GCa--GCCCCGgGGCG- -5'
29418 3' -65.6 NC_006151.1 + 66668 0.76 0.112298
Target:  5'- uGGCGGCGGUggacgccauGCggaCGUcCGGGGCCuuCCGCc -3'
miRNA:   3'- -CCGCCGCCA---------CGa--GCA-GCCCCGG--GGCG- -5'
29418 3' -65.6 NC_006151.1 + 131445 0.76 0.115067
Target:  5'- gGGCGGCGG-GCggaaGUCcGGGCgCCGCa -3'
miRNA:   3'- -CCGCCGCCaCGag--CAGcCCCGgGGCG- -5'
29418 3' -65.6 NC_006151.1 + 28180 0.76 0.115067
Target:  5'- gGGCGGCGaGUGC-CGUCGgccGGGCCgccaCGCa -3'
miRNA:   3'- -CCGCCGC-CACGaGCAGC---CCCGGg---GCG- -5'
29418 3' -65.6 NC_006151.1 + 90670 0.76 0.116193
Target:  5'- gGGCGGCGGgccGCUUGUCccccgcggcgGGGgcggcggacgcgcccGCCCCGCa -3'
miRNA:   3'- -CCGCCGCCa--CGAGCAG----------CCC---------------CGGGGCG- -5'
29418 3' -65.6 NC_006151.1 + 17124 0.76 0.117901
Target:  5'- cGGCGGCGGUGCUgCGggaGGcGGCCaggaGCa -3'
miRNA:   3'- -CCGCCGCCACGA-GCag-CC-CCGGgg--CG- -5'
29418 3' -65.6 NC_006151.1 + 25386 0.75 0.133066
Target:  5'- cGGCGGCGGUGguuCUCGaccgcgacgGGGGCgCCGCc -3'
miRNA:   3'- -CCGCCGCCAC---GAGCag-------CCCCGgGGCG- -5'
29418 3' -65.6 NC_006151.1 + 66788 0.75 0.133066
Target:  5'- cGGCGGCGGcgGCgg--CGGGGCCCgGg -3'
miRNA:   3'- -CCGCCGCCa-CGagcaGCCCCGGGgCg -5'
29418 3' -65.6 NC_006151.1 + 17474 0.75 0.146472
Target:  5'- cGCGGCGuGUcCUCGUCGGcGGCgCgCCGCu -3'
miRNA:   3'- cCGCCGC-CAcGAGCAGCC-CCG-G-GGCG- -5'
29418 3' -65.6 NC_006151.1 + 131021 0.74 0.152171
Target:  5'- cGGCGuaGCGGgugaaggccucccGCUCGUCGGGGCCggaggCCGUc -3'
miRNA:   3'- -CCGC--CGCCa------------CGAGCAGCCCCGG-----GGCG- -5'
29418 3' -65.6 NC_006151.1 + 116854 0.74 0.153627
Target:  5'- cGGCGGCGGggaagGCcgcgUCGUCGccGGCCuuGCa -3'
miRNA:   3'- -CCGCCGCCa----CG----AGCAGCc-CCGGggCG- -5'
29418 3' -65.6 NC_006151.1 + 83380 0.74 0.153627
Target:  5'- aGGCGccGCaGGUGCUCGUCcGGGUCCaGCg -3'
miRNA:   3'- -CCGC--CG-CCACGAGCAGcCCCGGGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.