miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29418 3' -65.6 NC_006151.1 + 2402 0.71 0.25536
Target:  5'- gGGCcGCGGaGCUCGgCGaGGCCCCGg -3'
miRNA:   3'- -CCGcCGCCaCGAGCaGCcCCGGGGCg -5'
29418 3' -65.6 NC_006151.1 + 2481 0.71 0.272887
Target:  5'- uGGcCGcGCGGUGCcCGaaGGcGGCgCCCGCg -3'
miRNA:   3'- -CC-GC-CGCCACGaGCagCC-CCG-GGGCG- -5'
29418 3' -65.6 NC_006151.1 + 2606 0.72 0.208286
Target:  5'- cGCGGCGGcaGCgggacCGgggucCGGGGCCCgGCg -3'
miRNA:   3'- cCGCCGCCa-CGa----GCa----GCCCCGGGgCG- -5'
29418 3' -65.6 NC_006151.1 + 3005 0.66 0.482132
Target:  5'- gGGCguugaGGCGGccgaUGUCGGGGCgCCCGg -3'
miRNA:   3'- -CCG-----CCGCCacgaGCAGCCCCG-GGGCg -5'
29418 3' -65.6 NC_006151.1 + 3076 0.66 0.508942
Target:  5'- aGGCGGUGGgcgaagGCggcgagcagCGcCGaGaGGCCgCCGCg -3'
miRNA:   3'- -CCGCCGCCa-----CGa--------GCaGC-C-CCGG-GGCG- -5'
29418 3' -65.6 NC_006151.1 + 3242 0.77 0.106944
Target:  5'- aGGCGGCGcG-GCggCGgagCGGGGCgCCGCg -3'
miRNA:   3'- -CCGCCGC-CaCGa-GCa--GCCCCGgGGCG- -5'
29418 3' -65.6 NC_006151.1 + 3456 0.72 0.213122
Target:  5'- gGGCGcGgGGUGCUCGggcauGGGCCCgaGCg -3'
miRNA:   3'- -CCGC-CgCCACGAGCagc--CCCGGGg-CG- -5'
29418 3' -65.6 NC_006151.1 + 3572 0.67 0.456023
Target:  5'- gGGa-GCGGcGCUUGcgcCGGGGCCCC-Cg -3'
miRNA:   3'- -CCgcCGCCaCGAGCa--GCCCCGGGGcG- -5'
29418 3' -65.6 NC_006151.1 + 3931 0.69 0.345379
Target:  5'- aGCGGgGGcagGC-CGggCGcGGGCUCCGCg -3'
miRNA:   3'- cCGCCgCCa--CGaGCa-GC-CCCGGGGCG- -5'
29418 3' -65.6 NC_006151.1 + 4033 0.68 0.374961
Target:  5'- aGGUccaGGCGGc-CUCGcgggCGcGGGCCCCGUc -3'
miRNA:   3'- -CCG---CCGCCacGAGCa---GC-CCCGGGGCG- -5'
29418 3' -65.6 NC_006151.1 + 4629 0.67 0.44749
Target:  5'- cGGCgcuGGCagaacuGGUugaagcGCUgGUCGGGGgCCUGCa -3'
miRNA:   3'- -CCG---CCG------CCA------CGAgCAGCCCCgGGGCG- -5'
29418 3' -65.6 NC_006151.1 + 5014 0.69 0.316836
Target:  5'- gGGCcgGGCGG-GCUcCGgggcCGGGGCCggggaggCCGCg -3'
miRNA:   3'- -CCG--CCGCCaCGA-GCa---GCCCCGG-------GGCG- -5'
29418 3' -65.6 NC_006151.1 + 5092 0.69 0.359958
Target:  5'- cGCGGCGG-GCgccggCGgagacggUGGcGGCCCgGCg -3'
miRNA:   3'- cCGCCGCCaCGa----GCa------GCC-CCGGGgCG- -5'
29418 3' -65.6 NC_006151.1 + 5366 0.69 0.337544
Target:  5'- cGGCgccGGCGGgGCU-GUCucugcggGGGcGCCCCGCc -3'
miRNA:   3'- -CCG---CCGCCaCGAgCAG-------CCC-CGGGGCG- -5'
29418 3' -65.6 NC_006151.1 + 5553 0.82 0.041397
Target:  5'- cGGCGGCGG-GCUCGUCGagcaGGGgCUCGCg -3'
miRNA:   3'- -CCGCCGCCaCGAGCAGC----CCCgGGGCG- -5'
29418 3' -65.6 NC_006151.1 + 5658 0.78 0.09004
Target:  5'- cGGCGGCGGgggagGCUgGggaagCGGGcCCCCGCc -3'
miRNA:   3'- -CCGCCGCCa----CGAgCa----GCCCcGGGGCG- -5'
29418 3' -65.6 NC_006151.1 + 6235 0.7 0.304223
Target:  5'- cGGCGcCGGgagcccugGCUgccgcCGUCGGGGCCggaCGCg -3'
miRNA:   3'- -CCGCcGCCa-------CGA-----GCAGCCCCGGg--GCG- -5'
29418 3' -65.6 NC_006151.1 + 7025 0.67 0.439046
Target:  5'- cGCGGCGGccaucucgGCUCGcCcGGGCCaaugggCGCg -3'
miRNA:   3'- cCGCCGCCa-------CGAGCaGcCCCGGg-----GCG- -5'
29418 3' -65.6 NC_006151.1 + 8146 0.67 0.414275
Target:  5'- gGGgGGCgGGUGCaaaGgggCGGGGCCCa-- -3'
miRNA:   3'- -CCgCCG-CCACGag-Ca--GCCCCGGGgcg -5'
29418 3' -65.6 NC_006151.1 + 10470 0.66 0.518019
Target:  5'- cGGCGGCGGUgaaggaggagaGC-CGccCGGcGcGCgCCCGCc -3'
miRNA:   3'- -CCGCCGCCA-----------CGaGCa-GCC-C-CG-GGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.