miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29418 5' -53.8 NC_006151.1 + 106836 1.09 0.004167
Target:  5'- cAUGGAGAACCUGGACGUGUACUCGCCc -3'
miRNA:   3'- -UACCUCUUGGACCUGCACAUGAGCGG- -5'
29418 5' -53.8 NC_006151.1 + 8743 0.79 0.354971
Target:  5'- -aGGGGGguGCCcGGGCGUGU-CUCGCCu -3'
miRNA:   3'- uaCCUCU--UGGaCCUGCACAuGAGCGG- -5'
29418 5' -53.8 NC_006151.1 + 54710 0.77 0.414219
Target:  5'- cUGGgccAGGGCCUGGACGagGUggccgaGCUCGCCg -3'
miRNA:   3'- uACC---UCUUGGACCUGCa-CA------UGAGCGG- -5'
29418 5' -53.8 NC_006151.1 + 3401 0.77 0.432231
Target:  5'- -cGGAGGGCC-GcGGCGUGUGgguCUCGCCg -3'
miRNA:   3'- uaCCUCUUGGaC-CUGCACAU---GAGCGG- -5'
29418 5' -53.8 NC_006151.1 + 127337 0.73 0.662836
Target:  5'- -cGGGGGugCUGGuacACGUGgucgguCUCGCCc -3'
miRNA:   3'- uaCCUCUugGACC---UGCACau----GAGCGG- -5'
29418 5' -53.8 NC_006151.1 + 78656 0.71 0.773609
Target:  5'- gGUGGAGGcgGCCgGGGCGcggGUGCUggacgggcucuaCGCCg -3'
miRNA:   3'- -UACCUCU--UGGaCCUGCa--CAUGA------------GCGG- -5'
29418 5' -53.8 NC_006151.1 + 109548 0.7 0.796112
Target:  5'- -cGGAGGcGCCgUGGACGUGgcccgagccgagggACUCuGCCg -3'
miRNA:   3'- uaCCUCU-UGG-ACCUGCACa-------------UGAG-CGG- -5'
29418 5' -53.8 NC_006151.1 + 19456 0.7 0.801605
Target:  5'- cUGGAGccgcggcACCUcGGGCGgcagGUAgUCGCCg -3'
miRNA:   3'- uACCUCu------UGGA-CCUGCa---CAUgAGCGG- -5'
29418 5' -53.8 NC_006151.1 + 48935 0.7 0.801605
Target:  5'- -aGGAGGugCUgcccgcgcgcgaGGACGUGU--UCGCCu -3'
miRNA:   3'- uaCCUCUugGA------------CCUGCACAugAGCGG- -5'
29418 5' -53.8 NC_006151.1 + 96752 0.7 0.819486
Target:  5'- -cGGAG-GCCaUGGcgGCGUGUGCUCGaCa -3'
miRNA:   3'- uaCCUCuUGG-ACC--UGCACAUGAGCgG- -5'
29418 5' -53.8 NC_006151.1 + 85333 0.7 0.819486
Target:  5'- cUGGAGGGCCacaGCGU--GCUCGCCg -3'
miRNA:   3'- uACCUCUUGGaccUGCAcaUGAGCGG- -5'
29418 5' -53.8 NC_006151.1 + 55817 0.69 0.843316
Target:  5'- -aGGAGGACCUGugcGGCGUGguguuuaagaagACgCGCCu -3'
miRNA:   3'- uaCCUCUUGGAC---CUGCACa-----------UGaGCGG- -5'
29418 5' -53.8 NC_006151.1 + 125541 0.69 0.85306
Target:  5'- cGUGGAGGugCgcgGcGGCGUGUACgUGCa -3'
miRNA:   3'- -UACCUCUugGa--C-CUGCACAUGaGCGg -5'
29418 5' -53.8 NC_006151.1 + 69395 0.69 0.860951
Target:  5'- -cGGGGGuCCUgGGGCGUGagcaggaGCUCGUCg -3'
miRNA:   3'- uaCCUCUuGGA-CCUGCACa------UGAGCGG- -5'
29418 5' -53.8 NC_006151.1 + 140403 0.69 0.860951
Target:  5'- --cGAGGACCUGGGgG---ACUCGCCc -3'
miRNA:   3'- uacCUCUUGGACCUgCacaUGAGCGG- -5'
29418 5' -53.8 NC_006151.1 + 10990 0.68 0.876083
Target:  5'- gGUGGAGcgGGCCggGGGCcccgGCUCGCCc -3'
miRNA:   3'- -UACCUC--UUGGa-CCUGcacaUGAGCGG- -5'
29418 5' -53.8 NC_006151.1 + 89620 0.68 0.876083
Target:  5'- -cGcGAGGAUgaGGAgCGUGUGCgCGCCc -3'
miRNA:   3'- uaC-CUCUUGgaCCU-GCACAUGaGCGG- -5'
29418 5' -53.8 NC_006151.1 + 77611 0.68 0.879002
Target:  5'- cUGGAccucugcggccgcgcGGAgCUGGACGUGUACgaccccuaccUCGUCg -3'
miRNA:   3'- uACCU---------------CUUgGACCUGCACAUG----------AGCGG- -5'
29418 5' -53.8 NC_006151.1 + 100871 0.68 0.882599
Target:  5'- cUGGGccgccguGAACCUGGAg--GUGCUgCGCCg -3'
miRNA:   3'- uACCU-------CUUGGACCUgcaCAUGA-GCGG- -5'
29418 5' -53.8 NC_006151.1 + 49162 0.68 0.897069
Target:  5'- cUGGAG-GCCUGGGCGcgccgcgggGUGCUgcUGCUg -3'
miRNA:   3'- uACCUCuUGGACCUGCa--------CAUGA--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.