miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29418 5' -53.8 NC_006151.1 + 3401 0.77 0.432231
Target:  5'- -cGGAGGGCC-GcGGCGUGUGgguCUCGCCg -3'
miRNA:   3'- uaCCUCUUGGaC-CUGCACAU---GAGCGG- -5'
29418 5' -53.8 NC_006151.1 + 8743 0.79 0.354971
Target:  5'- -aGGGGGguGCCcGGGCGUGU-CUCGCCu -3'
miRNA:   3'- uaCCUCU--UGGaCCUGCACAuGAGCGG- -5'
29418 5' -53.8 NC_006151.1 + 10990 0.68 0.876083
Target:  5'- gGUGGAGcgGGCCggGGGCcccgGCUCGCCc -3'
miRNA:   3'- -UACCUC--UUGGa-CCUGcacaUGAGCGG- -5'
29418 5' -53.8 NC_006151.1 + 11048 0.67 0.921684
Target:  5'- -cGGGGGcccgGCCUGGACGcgggccacacUGUGCggcggaccgUGCCa -3'
miRNA:   3'- uaCCUCU----UGGACCUGC----------ACAUGa--------GCGG- -5'
29418 5' -53.8 NC_006151.1 + 19456 0.7 0.801605
Target:  5'- cUGGAGccgcggcACCUcGGGCGgcagGUAgUCGCCg -3'
miRNA:   3'- uACCUCu------UGGA-CCUGCa---CAUgAGCGG- -5'
29418 5' -53.8 NC_006151.1 + 31752 0.67 0.932507
Target:  5'- -cGGGGAcgcGCCUGcGGCGgcggGCgcgCGCCg -3'
miRNA:   3'- uaCCUCU---UGGAC-CUGCaca-UGa--GCGG- -5'
29418 5' -53.8 NC_006151.1 + 33099 0.67 0.92722
Target:  5'- gGUGGAGGGgggagaggaaggUCUGGGCGcGUGC-CGCg -3'
miRNA:   3'- -UACCUCUU------------GGACCUGCaCAUGaGCGg -5'
29418 5' -53.8 NC_006151.1 + 45167 0.67 0.915899
Target:  5'- gAUGGAcGGACggGGugGcGUGCcCGCCa -3'
miRNA:   3'- -UACCU-CUUGgaCCugCaCAUGaGCGG- -5'
29418 5' -53.8 NC_006151.1 + 48935 0.7 0.801605
Target:  5'- -aGGAGGugCUgcccgcgcgcgaGGACGUGU--UCGCCu -3'
miRNA:   3'- uaCCUCUugGA------------CCUGCACAugAGCGG- -5'
29418 5' -53.8 NC_006151.1 + 49162 0.68 0.897069
Target:  5'- cUGGAG-GCCUGGGCGcgccgcgggGUGCUgcUGCUg -3'
miRNA:   3'- uACCUCuUGGACCUGCa--------CAUGA--GCGG- -5'
29418 5' -53.8 NC_006151.1 + 53842 0.67 0.915899
Target:  5'- --uGAGggUCUGGAUGcacGUGCUCuuGCCg -3'
miRNA:   3'- uacCUCuuGGACCUGCa--CAUGAG--CGG- -5'
29418 5' -53.8 NC_006151.1 + 54710 0.77 0.414219
Target:  5'- cUGGgccAGGGCCUGGACGagGUggccgaGCUCGCCg -3'
miRNA:   3'- uACC---UCUUGGACCUGCa-CA------UGAGCGG- -5'
29418 5' -53.8 NC_006151.1 + 55817 0.69 0.843316
Target:  5'- -aGGAGGACCUGugcGGCGUGguguuuaagaagACgCGCCu -3'
miRNA:   3'- uaCCUCUUGGAC---CUGCACa-----------UGaGCGG- -5'
29418 5' -53.8 NC_006151.1 + 69395 0.69 0.860951
Target:  5'- -cGGGGGuCCUgGGGCGUGagcaggaGCUCGUCg -3'
miRNA:   3'- uaCCUCUuGGA-CCUGCACa------UGAGCGG- -5'
29418 5' -53.8 NC_006151.1 + 77611 0.68 0.879002
Target:  5'- cUGGAccucugcggccgcgcGGAgCUGGACGUGUACgaccccuaccUCGUCg -3'
miRNA:   3'- uACCU---------------CUUgGACCUGCACAUG----------AGCGG- -5'
29418 5' -53.8 NC_006151.1 + 78656 0.71 0.773609
Target:  5'- gGUGGAGGcgGCCgGGGCGcggGUGCUggacgggcucuaCGCCg -3'
miRNA:   3'- -UACCUCU--UGGaCCUGCa--CAUGA------------GCGG- -5'
29418 5' -53.8 NC_006151.1 + 80334 0.67 0.915899
Target:  5'- -gGGGGGACCgGGGCGagGgcgGCUCuCCg -3'
miRNA:   3'- uaCCUCUUGGaCCUGCa-Ca--UGAGcGG- -5'
29418 5' -53.8 NC_006151.1 + 85333 0.7 0.819486
Target:  5'- cUGGAGGGCCacaGCGU--GCUCGCCg -3'
miRNA:   3'- uACCUCUUGGaccUGCAcaUGAGCGG- -5'
29418 5' -53.8 NC_006151.1 + 89620 0.68 0.876083
Target:  5'- -cGcGAGGAUgaGGAgCGUGUGCgCGCCc -3'
miRNA:   3'- uaC-CUCUUGgaCCU-GCACAUGaGCGG- -5'
29418 5' -53.8 NC_006151.1 + 92797 0.66 0.9414
Target:  5'- -aGGAGc-CCUcGGACGUGacaaggucuuugGCUCGCUg -3'
miRNA:   3'- uaCCUCuuGGA-CCUGCACa-----------UGAGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.