miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29419 3' -55.3 NC_006151.1 + 37304 0.67 0.885787
Target:  5'- cGCUCAUgGcCGACGgGCcCCCGCc- -3'
miRNA:   3'- cCGAGUAgUaGCUGUgCGuGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 63267 0.67 0.885787
Target:  5'- aGCUCGUCA-CGACGCgGUugCUGgaGa -3'
miRNA:   3'- cCGAGUAGUaGCUGUG-CGugGGCgaC- -5'
29419 3' -55.3 NC_006151.1 + 81528 0.67 0.885787
Target:  5'- aGCUCGgcggCcgCGGCgGCGCGCuCCGCg- -3'
miRNA:   3'- cCGAGUa---GuaGCUG-UGCGUG-GGCGac -5'
29419 3' -55.3 NC_006151.1 + 127310 0.67 0.885787
Target:  5'- aGGC-CGUCGUCcGCGCGggUCCGCg- -3'
miRNA:   3'- -CCGaGUAGUAGcUGUGCguGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 65248 0.67 0.885787
Target:  5'- cGGC-CGUCA-CGAcCAUGUugCCGCa- -3'
miRNA:   3'- -CCGaGUAGUaGCU-GUGCGugGGCGac -5'
29419 3' -55.3 NC_006151.1 + 104866 0.67 0.885787
Target:  5'- cGGCgaCGgagCG-CGcCACGCGCCUGCUGc -3'
miRNA:   3'- -CCGa-GUa--GUaGCuGUGCGUGGGCGAC- -5'
29419 3' -55.3 NC_006151.1 + 113408 0.67 0.885787
Target:  5'- uGCUCA-CG-CG-CGCGCACUgGCUGg -3'
miRNA:   3'- cCGAGUaGUaGCuGUGCGUGGgCGAC- -5'
29419 3' -55.3 NC_006151.1 + 57620 0.67 0.878742
Target:  5'- cGGCcgCcUCGaCGGCGCGCGagacCCCGUUGg -3'
miRNA:   3'- -CCGa-GuAGUaGCUGUGCGU----GGGCGAC- -5'
29419 3' -55.3 NC_006151.1 + 26602 0.67 0.878742
Target:  5'- gGGCUCAaacacgUCGUCGu--CGC-CCaCGCUGg -3'
miRNA:   3'- -CCGAGU------AGUAGCuguGCGuGG-GCGAC- -5'
29419 3' -55.3 NC_006151.1 + 4940 0.67 0.878742
Target:  5'- cGGCcCGUCgGUCGGCGgGgGCCCGUc- -3'
miRNA:   3'- -CCGaGUAG-UAGCUGUgCgUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 136710 0.67 0.871475
Target:  5'- aGCUCAacaUCcgCGACACGuCGCCCa--- -3'
miRNA:   3'- cCGAGU---AGuaGCUGUGC-GUGGGcgac -5'
29419 3' -55.3 NC_006151.1 + 122759 0.67 0.871475
Target:  5'- aGCUCGacaUCAUCGACGgGCugCUcgugggcgGCUGc -3'
miRNA:   3'- cCGAGU---AGUAGCUGUgCGugGG--------CGAC- -5'
29419 3' -55.3 NC_006151.1 + 128104 0.67 0.871475
Target:  5'- uGGCcCGUCGUCGccaGCACGCGCgCGa-- -3'
miRNA:   3'- -CCGaGUAGUAGC---UGUGCGUGgGCgac -5'
29419 3' -55.3 NC_006151.1 + 66539 0.67 0.871475
Target:  5'- cGCUCuUCGggGGCGCGCGCggCCGCg- -3'
miRNA:   3'- cCGAGuAGUagCUGUGCGUG--GGCGac -5'
29419 3' -55.3 NC_006151.1 + 71813 0.67 0.871475
Target:  5'- aGCUCG-CG-CGugGCGCuGCCCaGCUGg -3'
miRNA:   3'- cCGAGUaGUaGCugUGCG-UGGG-CGAC- -5'
29419 3' -55.3 NC_006151.1 + 106170 0.67 0.871475
Target:  5'- cGCUgGaCcgCGuCGCGCACCCGCc- -3'
miRNA:   3'- cCGAgUaGuaGCuGUGCGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 99653 0.67 0.863991
Target:  5'- uGGCUCGcCuUCcGCGCGCAgagCCGCUGg -3'
miRNA:   3'- -CCGAGUaGuAGcUGUGCGUg--GGCGAC- -5'
29419 3' -55.3 NC_006151.1 + 135689 0.67 0.863991
Target:  5'- cGGCUg--CG-CGAuCACGUACUCGCUGa -3'
miRNA:   3'- -CCGAguaGUaGCU-GUGCGUGGGCGAC- -5'
29419 3' -55.3 NC_006151.1 + 114151 0.67 0.863991
Target:  5'- cGGCUCGggcgCAgCGAcCGCGCgGCCCucguGCUGg -3'
miRNA:   3'- -CCGAGUa---GUaGCU-GUGCG-UGGG----CGAC- -5'
29419 3' -55.3 NC_006151.1 + 105429 0.67 0.863991
Target:  5'- gGGCgCAUCGagagcaaguacUCGGCGCGCGCCgGggccCUGg -3'
miRNA:   3'- -CCGaGUAGU-----------AGCUGUGCGUGGgC----GAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.