miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29419 3' -55.3 NC_006151.1 + 105114 1.11 0.002288
Target:  5'- cGGCUCAUCAUCGACACGCACCCGCUGa -3'
miRNA:   3'- -CCGAGUAGUAGCUGUGCGUGGGCGAC- -5'
29419 3' -55.3 NC_006151.1 + 28116 0.77 0.348385
Target:  5'- cGGCUCcUCGUCGGCucgggGCGCGCuCCGCg- -3'
miRNA:   3'- -CCGAGuAGUAGCUG-----UGCGUG-GGCGac -5'
29419 3' -55.3 NC_006151.1 + 62370 0.77 0.356254
Target:  5'- cGGCgUCGUCAUCGGgACGCGCgCCGUccUGg -3'
miRNA:   3'- -CCG-AGUAGUAGCUgUGCGUG-GGCG--AC- -5'
29419 3' -55.3 NC_006151.1 + 63338 0.77 0.380605
Target:  5'- aGGC-C-UCcUCGGCGCGCGCCCGCa- -3'
miRNA:   3'- -CCGaGuAGuAGCUGUGCGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 138483 0.75 0.44157
Target:  5'- gGGCaaUCAugcUCcUCGGCGgGCGCCCGCUGc -3'
miRNA:   3'- -CCG--AGU---AGuAGCUGUgCGUGGGCGAC- -5'
29419 3' -55.3 NC_006151.1 + 120882 0.75 0.459981
Target:  5'- cGCUcCGUCAUgGcCuCGCGCCCGCUGg -3'
miRNA:   3'- cCGA-GUAGUAgCuGuGCGUGGGCGAC- -5'
29419 3' -55.3 NC_006151.1 + 112318 0.75 0.488339
Target:  5'- cGGCaUCA-CGUCcucgaaccaGACGCGCACCCGCg- -3'
miRNA:   3'- -CCG-AGUaGUAG---------CUGUGCGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 20885 0.74 0.497007
Target:  5'- cGCUUGggGUCGAggcgcagcagcucCACGCGCCCGCUGu -3'
miRNA:   3'- cCGAGUagUAGCU-------------GUGCGUGGGCGAC- -5'
29419 3' -55.3 NC_006151.1 + 33955 0.72 0.608355
Target:  5'- gGGCUCGgggCGg-GACGCgGCGCCCGCg- -3'
miRNA:   3'- -CCGAGUa--GUagCUGUG-CGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 120315 0.72 0.608355
Target:  5'- gGGCUCGggCAgccucUCGgacgccGCGCGCGCCCGCg- -3'
miRNA:   3'- -CCGAGUa-GU-----AGC------UGUGCGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 101521 0.72 0.608355
Target:  5'- gGGCagAUCAcccaggccuUCGugGCGCGCCUGCg- -3'
miRNA:   3'- -CCGagUAGU---------AGCugUGCGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 84565 0.72 0.618633
Target:  5'- gGGCuUCAgcgagggCcUCGACGCGCGCCucgCGCUGg -3'
miRNA:   3'- -CCG-AGUa------GuAGCUGUGCGUGG---GCGAC- -5'
29419 3' -55.3 NC_006151.1 + 93673 0.72 0.639212
Target:  5'- aGGCU-GUCGcgCGggGCGCGCGCCCGCa- -3'
miRNA:   3'- -CCGAgUAGUa-GC--UGUGCGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 125279 0.72 0.639212
Target:  5'- cGGC-CGUCAaCGGCACgggGCACCUGCg- -3'
miRNA:   3'- -CCGaGUAGUaGCUGUG---CGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 128919 0.71 0.659768
Target:  5'- cGCUCGUCGUCcgaGCGCACCUccacgcccgaGCUGg -3'
miRNA:   3'- cCGAGUAGUAGcugUGCGUGGG----------CGAC- -5'
29419 3' -55.3 NC_006151.1 + 60141 0.71 0.659768
Target:  5'- aGGUUCGUCAccugCGACagGCGCGCCgGCc- -3'
miRNA:   3'- -CCGAGUAGUa---GCUG--UGCGUGGgCGac -5'
29419 3' -55.3 NC_006151.1 + 673 0.71 0.659768
Target:  5'- gGGCUCcgcggaucgCAUCGGCGCGCcgaGCCUGCc- -3'
miRNA:   3'- -CCGAGua-------GUAGCUGUGCG---UGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 81485 0.71 0.659768
Target:  5'- gGGCUCGUuccacgcggcCGUCGGCgagaGCGCGgCCCGCg- -3'
miRNA:   3'- -CCGAGUA----------GUAGCUG----UGCGU-GGGCGac -5'
29419 3' -55.3 NC_006151.1 + 87213 0.71 0.670017
Target:  5'- gGGC-CGUCGUgGgACAccCGCACCCGCa- -3'
miRNA:   3'- -CCGaGUAGUAgC-UGU--GCGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 88886 0.71 0.674108
Target:  5'- gGGCUCGUCAaaguacucggggUCGGCGucgggcgagcggaaGCGCCCGCg- -3'
miRNA:   3'- -CCGAGUAGU------------AGCUGUg-------------CGUGGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.