miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29419 3' -55.3 NC_006151.1 + 673 0.71 0.659768
Target:  5'- gGGCUCcgcggaucgCAUCGGCGCGCcgaGCCUGCc- -3'
miRNA:   3'- -CCGAGua-------GUAGCUGUGCG---UGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 4940 0.67 0.878742
Target:  5'- cGGCcCGUCgGUCGGCGgGgGCCCGUc- -3'
miRNA:   3'- -CCGaGUAG-UAGCUGUgCgUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 16873 0.69 0.814884
Target:  5'- uGGUaCAUCG-CGGgGCGCGCUCGCg- -3'
miRNA:   3'- -CCGaGUAGUaGCUgUGCGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 17476 0.71 0.710611
Target:  5'- cGGCgugUCcUCGUCGGCG-GCGCgCCGCUGc -3'
miRNA:   3'- -CCG---AGuAGUAGCUGUgCGUG-GGCGAC- -5'
29419 3' -55.3 NC_006151.1 + 18384 0.69 0.787962
Target:  5'- aGGCUCA-CGUaCGGCcccuCGUAgCCGCUGu -3'
miRNA:   3'- -CCGAGUaGUA-GCUGu---GCGUgGGCGAC- -5'
29419 3' -55.3 NC_006151.1 + 20885 0.74 0.497007
Target:  5'- cGCUUGggGUCGAggcgcagcagcucCACGCGCCCGCUGu -3'
miRNA:   3'- cCGAGUagUAGCU-------------GUGCGUGGGCGAC- -5'
29419 3' -55.3 NC_006151.1 + 21359 0.68 0.823534
Target:  5'- cGGCUCcgCGggcugCGGC---CACCCGCUGg -3'
miRNA:   3'- -CCGAGuaGUa----GCUGugcGUGGGCGAC- -5'
29419 3' -55.3 NC_006151.1 + 23374 0.67 0.892606
Target:  5'- aGGCgcccUCGUCgGUCGAgGggaaGCACCCGCg- -3'
miRNA:   3'- -CCG----AGUAG-UAGCUgUg---CGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 26602 0.67 0.878742
Target:  5'- gGGCUCAaacacgUCGUCGu--CGC-CCaCGCUGg -3'
miRNA:   3'- -CCGAGU------AGUAGCuguGCGuGG-GCGAC- -5'
29419 3' -55.3 NC_006151.1 + 28116 0.77 0.348385
Target:  5'- cGGCUCcUCGUCGGCucgggGCGCGCuCCGCg- -3'
miRNA:   3'- -CCGAGuAGUAGCUG-----UGCGUG-GGCGac -5'
29419 3' -55.3 NC_006151.1 + 33955 0.72 0.608355
Target:  5'- gGGCUCGgggCGg-GACGCgGCGCCCGCg- -3'
miRNA:   3'- -CCGAGUa--GUagCUGUG-CGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 36734 0.68 0.823534
Target:  5'- cGGCUCgAUCcUCGGccgcUugGCGCCCGgaGc -3'
miRNA:   3'- -CCGAG-UAGuAGCU----GugCGUGGGCgaC- -5'
29419 3' -55.3 NC_006151.1 + 37304 0.67 0.885787
Target:  5'- cGCUCAUgGcCGACGgGCcCCCGCc- -3'
miRNA:   3'- cCGAGUAgUaGCUGUgCGuGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 37674 0.66 0.917538
Target:  5'- cGGCuccuUCAUCAcCGGCAgcgugaccccgcCGCugCCGCa- -3'
miRNA:   3'- -CCG----AGUAGUaGCUGU------------GCGugGGCGac -5'
29419 3' -55.3 NC_006151.1 + 39341 0.71 0.710611
Target:  5'- cGGCUCggCG-CGGCGCgGCGCCgGCUc -3'
miRNA:   3'- -CCGAGuaGUaGCUGUG-CGUGGgCGAc -5'
29419 3' -55.3 NC_006151.1 + 45436 0.66 0.923174
Target:  5'- gGGUUCGcgggCGUCG-CACGCAC-CGCg- -3'
miRNA:   3'- -CCGAGUa---GUAGCuGUGCGUGgGCGac -5'
29419 3' -55.3 NC_006151.1 + 49001 0.66 0.905546
Target:  5'- aGGUggUCAUCAUCGGC-CaGgACCCGUa- -3'
miRNA:   3'- -CCG--AGUAGUAGCUGuG-CgUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 52351 0.69 0.813134
Target:  5'- aGGUcgUCGUCGUCGuccgccgGCGCGCccccgggGCCCGCg- -3'
miRNA:   3'- -CCG--AGUAGUAGC-------UGUGCG-------UGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 54431 0.66 0.928569
Target:  5'- cGGCgcuUCggCGACGagGCGCCCGCc- -3'
miRNA:   3'- -CCGaguAGuaGCUGUg-CGUGGGCGac -5'
29419 3' -55.3 NC_006151.1 + 55077 0.69 0.797089
Target:  5'- gGGCUCggCcgCGGCGCGC-CUCGUg- -3'
miRNA:   3'- -CCGAGuaGuaGCUGUGCGuGGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.