miRNA display CGI


Results 41 - 60 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29419 5' -62.5 NC_006151.1 + 88100 0.67 0.577065
Target:  5'- aGUCGACGGgcCCGuCGaGGUCCGacagcGGGCGGg -3'
miRNA:   3'- -CAGCUGCC--GGC-GC-CCGGGUa----CCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 130695 0.67 0.577065
Target:  5'- --gGAUGuCCGgGGGCCCGacgGGGCGGc -3'
miRNA:   3'- cagCUGCcGGCgCCCGGGUa--CCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 3352 0.67 0.577065
Target:  5'- -aCGAgGG-CGCGGGCCaccucGGGCGGg -3'
miRNA:   3'- caGCUgCCgGCGCCCGGgua--CCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 57889 0.67 0.576097
Target:  5'- cGUCGcagcgcaggcGCaGGCCGCagcucacGGGCCCGaGGGCGu -3'
miRNA:   3'- -CAGC----------UG-CCGGCG-------CCCGGGUaCCUGCu -5'
29419 5' -62.5 NC_006151.1 + 18542 0.67 0.567405
Target:  5'- cGUCGgcacccggaACGGCCGCGaGGCCgcCcgGcGGCGGg -3'
miRNA:   3'- -CAGC---------UGCCGGCGC-CCGG--GuaC-CUGCU- -5'
29419 5' -62.5 NC_006151.1 + 54694 0.67 0.567405
Target:  5'- cGUCGcCGGCagcguGCuGGGCCagggccUGGACGAg -3'
miRNA:   3'- -CAGCuGCCGg----CG-CCCGGgu----ACCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 65723 0.67 0.567405
Target:  5'- cUCGcGCGGCUGCGcgcGGCCCA-GGAgcCGGg -3'
miRNA:   3'- cAGC-UGCCGGCGC---CCGGGUaCCU--GCU- -5'
29419 5' -62.5 NC_006151.1 + 85169 0.67 0.567405
Target:  5'- -cCGGC-GCCGCGGGCgCCGccgccccgcUGGGCa- -3'
miRNA:   3'- caGCUGcCGGCGCCCG-GGU---------ACCUGcu -5'
29419 5' -62.5 NC_006151.1 + 28923 0.67 0.567405
Target:  5'- aUCGAUaaaucgccaaugGGCaCGUGGGCCCGaGGGCc- -3'
miRNA:   3'- cAGCUG------------CCG-GCGCCCGGGUaCCUGcu -5'
29419 5' -62.5 NC_006151.1 + 38786 0.67 0.567405
Target:  5'- -cCGGCGcCCGCucGGGCCCAUGccCGAg -3'
miRNA:   3'- caGCUGCcGGCG--CCCGGGUACcuGCU- -5'
29419 5' -62.5 NC_006151.1 + 86502 0.67 0.567405
Target:  5'- aUCgGGCGGCgCGUGGGCaCCAucgUGGuguACGAc -3'
miRNA:   3'- cAG-CUGCCG-GCGCCCG-GGU---ACC---UGCU- -5'
29419 5' -62.5 NC_006151.1 + 82290 0.67 0.557786
Target:  5'- --aGACGGCCGCGGGgcagcgcgccuCCgCGUccgcgaGGACGGc -3'
miRNA:   3'- cagCUGCCGGCGCCC-----------GG-GUA------CCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 100769 0.67 0.557786
Target:  5'- -gCGA-GGCCGCGGaccgcGUCC-UGGGCGAc -3'
miRNA:   3'- caGCUgCCGGCGCC-----CGGGuACCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 137462 0.67 0.557786
Target:  5'- -aCGACGGCCucgaggaGGcGCCCugGGACGAc -3'
miRNA:   3'- caGCUGCCGGcg-----CC-CGGGuaCCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 29977 0.67 0.557786
Target:  5'- -gCGAUGGUgaaUGGGCCCGcggccUGGACGAg -3'
miRNA:   3'- caGCUGCCGgc-GCCCGGGU-----ACCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 109952 0.67 0.557786
Target:  5'- -gCGGCcucGGCCGCGucuGGCCCAcccgGGAgGAc -3'
miRNA:   3'- caGCUG---CCGGCGC---CCGGGUa---CCUgCU- -5'
29419 5' -62.5 NC_006151.1 + 112595 0.67 0.557786
Target:  5'- uUCGugGaggccGCCGCGGcGCCgCuggcgcUGGACGAg -3'
miRNA:   3'- cAGCugC-----CGGCGCC-CGG-Gu-----ACCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 131769 0.67 0.557786
Target:  5'- gGUCGcgaccGCGGCCGCGGGCgCCGccGuCGu -3'
miRNA:   3'- -CAGC-----UGCCGGCGCCCG-GGUacCuGCu -5'
29419 5' -62.5 NC_006151.1 + 5549 0.67 0.556826
Target:  5'- cUCG-CGGCgGCGGGCUCGUcgagcagGGGCu- -3'
miRNA:   3'- cAGCuGCCGgCGCCCGGGUA-------CCUGcu -5'
29419 5' -62.5 NC_006151.1 + 7026 0.67 0.553951
Target:  5'- -gCGGCGGCCaucucggcucgccCGGGCCaAUGGGCGc -3'
miRNA:   3'- caGCUGCCGGc------------GCCCGGgUACCUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.