miRNA display CGI


Results 1 - 20 of 197 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29419 5' -62.5 NC_006151.1 + 105149 1.08 0.000877
Target:  5'- cGUCGACGGCCGCGGGCCCAUGGACGAg -3'
miRNA:   3'- -CAGCUGCCGGCGCCCGGGUACCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 85407 0.85 0.041722
Target:  5'- gGUCGACGG-CGCGGGCuUCGUGGACGAg -3'
miRNA:   3'- -CAGCUGCCgGCGCCCG-GGUACCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 49841 0.82 0.063141
Target:  5'- -aCGGCGGCgGCGGGCCCGcgcUGGGCGc -3'
miRNA:   3'- caGCUGCCGgCGCCCGGGU---ACCUGCu -5'
29419 5' -62.5 NC_006151.1 + 66793 0.81 0.071791
Target:  5'- -gCGGCGGCgGCgGGGCCCggGGACGAc -3'
miRNA:   3'- caGCUGCCGgCG-CCCGGGuaCCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 100209 0.8 0.083678
Target:  5'- cUCGAuggccaCGGCCGCGGGCgCCGUGGcCGAg -3'
miRNA:   3'- cAGCU------GCCGGCGCCCG-GGUACCuGCU- -5'
29419 5' -62.5 NC_006151.1 + 88400 0.8 0.088042
Target:  5'- cGUCcGCGGCCGCGaGGCCCG-GGACGu -3'
miRNA:   3'- -CAGcUGCCGGCGC-CCGGGUaCCUGCu -5'
29419 5' -62.5 NC_006151.1 + 27354 0.79 0.107753
Target:  5'- gGUCGugGGCCG-GGGCCC--GGGCGGg -3'
miRNA:   3'- -CAGCugCCGGCgCCCGGGuaCCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 111313 0.79 0.113293
Target:  5'- -gCGGCGGCCGCGuGCCCGggcacGGGCGAg -3'
miRNA:   3'- caGCUGCCGGCGCcCGGGUa----CCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 11039 0.77 0.138214
Target:  5'- -cCGGcCGGCCGgGGGCCCGgccUGGACGc -3'
miRNA:   3'- caGCU-GCCGGCgCCCGGGU---ACCUGCu -5'
29419 5' -62.5 NC_006151.1 + 78131 0.77 0.141662
Target:  5'- -gCGGCgGGCCGCGGGCgCCucGGACGAc -3'
miRNA:   3'- caGCUG-CCGGCGCCCG-GGuaCCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 75128 0.77 0.145189
Target:  5'- gGUCGGCGGCCggcgGCGcGGCCCAgcgcGGGCGc -3'
miRNA:   3'- -CAGCUGCCGG----CGC-CCGGGUa---CCUGCu -5'
29419 5' -62.5 NC_006151.1 + 40148 0.77 0.153982
Target:  5'- -gCGACGGCCGgccccgcggcccgcuCGGGCCCAUcaaGGugGAg -3'
miRNA:   3'- caGCUGCCGGC---------------GCCCGGGUA---CCugCU- -5'
29419 5' -62.5 NC_006151.1 + 5920 0.76 0.156254
Target:  5'- gGUCGGCGGCCG-GGGCCCGgagccggcccgGGACc- -3'
miRNA:   3'- -CAGCUGCCGGCgCCCGGGUa----------CCUGcu -5'
29419 5' -62.5 NC_006151.1 + 5246 0.76 0.16405
Target:  5'- -gCGGCGGCgGCggGGGCCCGggGGGCGGa -3'
miRNA:   3'- caGCUGCCGgCG--CCCGGGUa-CCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 101755 0.76 0.178106
Target:  5'- -cCGGCGGCCGCcgcgccgccgacgcgGGGCCCcgGGGCc- -3'
miRNA:   3'- caGCUGCCGGCG---------------CCCGGGuaCCUGcu -5'
29419 5' -62.5 NC_006151.1 + 98949 0.75 0.189567
Target:  5'- --aGGCGG-CGCGGG-CCGUGGACGAg -3'
miRNA:   3'- cagCUGCCgGCGCCCgGGUACCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 29063 0.75 0.194146
Target:  5'- aGUUGGCGgcGCCGCGGGCCCcgaGACGGc -3'
miRNA:   3'- -CAGCUGC--CGGCGCCCGGGuacCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 119590 0.75 0.194146
Target:  5'- uUCGGCGcGCCGaCGGaGCCCcAUGGGCGu -3'
miRNA:   3'- cAGCUGC-CGGC-GCC-CGGG-UACCUGCu -5'
29419 5' -62.5 NC_006151.1 + 72863 0.75 0.203593
Target:  5'- cGUCGGCgaGGCgGCGGcGCCCGUGucGGCGAu -3'
miRNA:   3'- -CAGCUG--CCGgCGCC-CGGGUAC--CUGCU- -5'
29419 5' -62.5 NC_006151.1 + 130914 0.75 0.208464
Target:  5'- cGUCGuCGGUgGcCGGGCCCGcggGGGCGGg -3'
miRNA:   3'- -CAGCuGCCGgC-GCCCGGGUa--CCUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.