miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29419 5' -62.5 NC_006151.1 + 2425 0.72 0.313617
Target:  5'- -cCGGCGGCCGCaggagacgaagacGGGCCgCAgcgGGGCGc -3'
miRNA:   3'- caGCUGCCGGCG-------------CCCGG-GUa--CCUGCu -5'
29419 5' -62.5 NC_006151.1 + 3352 0.67 0.577065
Target:  5'- -aCGAgGG-CGCGGGCCaccucGGGCGGg -3'
miRNA:   3'- caGCUgCCgGCGCCCGGgua--CCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 3679 0.69 0.456105
Target:  5'- -cCGG-GGCgGCGGGCCCcgGGcgcGCGGc -3'
miRNA:   3'- caGCUgCCGgCGCCCGGGuaCC---UGCU- -5'
29419 5' -62.5 NC_006151.1 + 4196 0.74 0.234349
Target:  5'- cUCGA-GGCagGCGGGCCCGaGGGCGGc -3'
miRNA:   3'- cAGCUgCCGg-CGCCCGGGUaCCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 4376 0.67 0.537745
Target:  5'- cUCGACGGUCGCcuccccggcgcggGGGUCCGcGGcGCGGc -3'
miRNA:   3'- cAGCUGCCGGCG-------------CCCGGGUaCC-UGCU- -5'
29419 5' -62.5 NC_006151.1 + 4519 0.68 0.473903
Target:  5'- -gCGGCagGGCCcagaGCGGGUCC-UGGGCGGc -3'
miRNA:   3'- caGCUG--CCGG----CGCCCGGGuACCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 4605 0.67 0.586762
Target:  5'- -cCG-UGGCCGUGGGgCgCGUGGACc- -3'
miRNA:   3'- caGCuGCCGGCGCCCgG-GUACCUGcu -5'
29419 5' -62.5 NC_006151.1 + 4945 0.68 0.529231
Target:  5'- cGUCGGuCGGCgG-GGGCCCGUcGGccaugaGCGAg -3'
miRNA:   3'- -CAGCU-GCCGgCgCCCGGGUA-CC------UGCU- -5'
29419 5' -62.5 NC_006151.1 + 5010 0.68 0.473903
Target:  5'- -gCGGgGGCCggGCGGGCUCcgGGGCc- -3'
miRNA:   3'- caGCUgCCGG--CGCCCGGGuaCCUGcu -5'
29419 5' -62.5 NC_006151.1 + 5076 0.72 0.30748
Target:  5'- -cCGAgGGCCGCGGGgCCGcggcGGGCGc -3'
miRNA:   3'- caGCUgCCGGCGCCCgGGUa---CCUGCu -5'
29419 5' -62.5 NC_006151.1 + 5110 0.68 0.482931
Target:  5'- --aGACGGUgGC-GGCCCGgcgcGGGCGAg -3'
miRNA:   3'- cagCUGCCGgCGcCCGGGUa---CCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 5246 0.76 0.16405
Target:  5'- -gCGGCGGCgGCggGGGCCCGggGGGCGGa -3'
miRNA:   3'- caGCUGCCGgCG--CCCGGGUa-CCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 5549 0.67 0.556826
Target:  5'- cUCG-CGGCgGCGGGCUCGUcgagcagGGGCu- -3'
miRNA:   3'- cAGCuGCCGgCGCCCGGGUA-------CCUGcu -5'
29419 5' -62.5 NC_006151.1 + 5920 0.76 0.156254
Target:  5'- gGUCGGCGGCCG-GGGCCCGgagccggcccgGGACc- -3'
miRNA:   3'- -CAGCUGCCGGCgCCCGGGUa----------CCUGcu -5'
29419 5' -62.5 NC_006151.1 + 6130 0.66 0.64535
Target:  5'- cUCGuggcucCGGCCGC-GGCCgCGaGGACGGc -3'
miRNA:   3'- cAGCu-----GCCGGCGcCCGG-GUaCCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 6791 0.69 0.456105
Target:  5'- -aUGGCGGCCGCcGGCCaAUGGgauuucGCGAg -3'
miRNA:   3'- caGCUGCCGGCGcCCGGgUACC------UGCU- -5'
29419 5' -62.5 NC_006151.1 + 7026 0.67 0.553951
Target:  5'- -gCGGCGGCCaucucggcucgccCGGGCCaAUGGGCGc -3'
miRNA:   3'- caGCUGCCGGc------------GCCCGGgUACCUGCu -5'
29419 5' -62.5 NC_006151.1 + 9691 0.67 0.538694
Target:  5'- -cCGccCGGCCGCGGguGCCCggGaGACGGg -3'
miRNA:   3'- caGCu-GCCGGCGCC--CGGGuaC-CUGCU- -5'
29419 5' -62.5 NC_006151.1 + 10223 0.66 0.64535
Target:  5'- --aGGCGGCUGCGGaCgCGgagggGGGCGAg -3'
miRNA:   3'- cagCUGCCGGCGCCcGgGUa----CCUGCU- -5'
29419 5' -62.5 NC_006151.1 + 11039 0.77 0.138214
Target:  5'- -cCGGcCGGCCGgGGGCCCGgccUGGACGc -3'
miRNA:   3'- caGCU-GCCGGCgCCCGGGU---ACCUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.