miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29420 3' -58.2 NC_006151.1 + 102197 1.06 0.002332
Target:  5'- cUUUCUGGUGGAGAACGGCGCCCGCACc -3'
miRNA:   3'- -AAAGACCACCUCUUGCCGCGGGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 56666 0.85 0.066268
Target:  5'- --gCUGGUGGAcGACGGCGCCgCGCGCg -3'
miRNA:   3'- aaaGACCACCUcUUGCCGCGG-GCGUG- -5'
29420 3' -58.2 NC_006151.1 + 33958 0.75 0.286089
Target:  5'- -cUCgGGgcgGGAc-GCGGCGCCCGCGCg -3'
miRNA:   3'- aaAGaCCa--CCUcuUGCCGCGGGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 9642 0.74 0.336203
Target:  5'- ----cGGgagGGAGAggcGCGGCGcCCCGCGCu -3'
miRNA:   3'- aaagaCCa--CCUCU---UGCCGC-GGGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 40119 0.74 0.343864
Target:  5'- -cUCU-GUGGAGAucguCGGCGUCCGCGg -3'
miRNA:   3'- aaAGAcCACCUCUu---GCCGCGGGCGUg -5'
29420 3' -58.2 NC_006151.1 + 31731 0.73 0.40094
Target:  5'- ----gGcGUGGAGA--GGCGCCCGCGCc -3'
miRNA:   3'- aaagaC-CACCUCUugCCGCGGGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 98211 0.73 0.40094
Target:  5'- ----gGGUcGAGugcgcGGCGGCGCCCGCGCg -3'
miRNA:   3'- aaagaCCAcCUC-----UUGCCGCGGGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 38195 0.72 0.418321
Target:  5'- --gCUGGUGcgcuacagcGuGGACGGgGCCCGCGCc -3'
miRNA:   3'- aaaGACCAC---------CuCUUGCCgCGGGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 89895 0.72 0.427181
Target:  5'- -cUCggcGGUGGGGu-CGGCGUCCGCGu -3'
miRNA:   3'- aaAGa--CCACCUCuuGCCGCGGGCGUg -5'
29420 3' -58.2 NC_006151.1 + 49558 0.72 0.436151
Target:  5'- ----cGGaGGAGAGCGGaugauggaGCCCGCGCu -3'
miRNA:   3'- aaagaCCaCCUCUUGCCg-------CGGGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 55373 0.7 0.515434
Target:  5'- ----aGGUgcgcgagcgcgagcaGGAGGuGCGGCGCCUGCGCg -3'
miRNA:   3'- aaagaCCA---------------CCUCU-UGCCGCGGGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 45072 0.7 0.531218
Target:  5'- ----cGGcUGGAGAGC-GCGCaCCGCGCg -3'
miRNA:   3'- aaagaCC-ACCUCUUGcCGCG-GGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 130892 0.7 0.561259
Target:  5'- ----cGGUGGAG-GCGGCGgCCGuCGCc -3'
miRNA:   3'- aaagaCCACCUCuUGCCGCgGGC-GUG- -5'
29420 3' -58.2 NC_006151.1 + 100870 0.69 0.570366
Target:  5'- --aCUGGgccgccgugaaccUGGAGGugcugcgccGCGGCGCgCGCGCg -3'
miRNA:   3'- aaaGACC-------------ACCUCU---------UGCCGCGgGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 59129 0.69 0.57138
Target:  5'- --gCUGccGGuGggUGGCGCCCGCGg -3'
miRNA:   3'- aaaGACcaCCuCuuGCCGCGGGCGUg -5'
29420 3' -58.2 NC_006151.1 + 73050 0.69 0.601976
Target:  5'- ----cGGUGGGGGugcGCGGgGUCCGCGu -3'
miRNA:   3'- aaagaCCACCUCU---UGCCgCGGGCGUg -5'
29420 3' -58.2 NC_006151.1 + 132148 0.69 0.601976
Target:  5'- ----cGGUGGuuGACGGCGCgcagCUGCGCg -3'
miRNA:   3'- aaagaCCACCucUUGCCGCG----GGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 11817 0.69 0.612229
Target:  5'- ----gGGUGGGGGGCGGCGgCgGCuCg -3'
miRNA:   3'- aaagaCCACCUCUUGCCGCgGgCGuG- -5'
29420 3' -58.2 NC_006151.1 + 80952 0.68 0.632772
Target:  5'- ---aUGGUGGAGu-UGGCGCCgGC-Ca -3'
miRNA:   3'- aaagACCACCUCuuGCCGCGGgCGuG- -5'
29420 3' -58.2 NC_006151.1 + 123473 0.68 0.632772
Target:  5'- ----cGGUGGAGAACGuGgGCCuccugcCGCACc -3'
miRNA:   3'- aaagaCCACCUCUUGC-CgCGG------GCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.