miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29420 3' -58.2 NC_006151.1 + 727 0.66 0.763168
Target:  5'- -gUCcgcgGGcGGGGGcuuccgcuccGCGGCGCCCGCc- -3'
miRNA:   3'- aaAGa---CCaCCUCU----------UGCCGCGGGCGug -5'
29420 3' -58.2 NC_006151.1 + 2489 0.68 0.683976
Target:  5'- ----cGGUGcccGAaGGCGGCGCCCGCGu -3'
miRNA:   3'- aaagaCCAC---CUcUUGCCGCGGGCGUg -5'
29420 3' -58.2 NC_006151.1 + 4980 0.68 0.64202
Target:  5'- ----aGGUGGuuguuguGGAGCGGCGCuucCUGCGCg -3'
miRNA:   3'- aaagaCCACC-------UCUUGCCGCG---GGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 5856 0.66 0.791187
Target:  5'- ----cGGaGGGGGACGaGCGCCCGgGg -3'
miRNA:   3'- aaagaCCaCCUCUUGC-CGCGGGCgUg -5'
29420 3' -58.2 NC_006151.1 + 8733 0.67 0.694122
Target:  5'- ----cGGUccgaGGAGGGgGGUGCCCGgGCg -3'
miRNA:   3'- aaagaCCA----CCUCUUgCCGCGGGCgUG- -5'
29420 3' -58.2 NC_006151.1 + 9642 0.74 0.336203
Target:  5'- ----cGGgagGGAGAggcGCGGCGcCCCGCGCu -3'
miRNA:   3'- aaagaCCa--CCUCU---UGCCGC-GGGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 10883 0.66 0.763168
Target:  5'- --cUUGGUgccGGAGAAaagggGGUGCCgGCGCg -3'
miRNA:   3'- aaaGACCA---CCUCUUg----CCGCGGgCGUG- -5'
29420 3' -58.2 NC_006151.1 + 11817 0.69 0.612229
Target:  5'- ----gGGUGGGGGGCGGCGgCgGCuCg -3'
miRNA:   3'- aaagaCCACCUCUUGCCGCgGgCGuG- -5'
29420 3' -58.2 NC_006151.1 + 19878 0.66 0.752616
Target:  5'- ----cGGUGGAGAGCGccagggccagcaGCGCCaggagcugcgcggCGCGCa -3'
miRNA:   3'- aaagaCCACCUCUUGC------------CGCGG-------------GCGUG- -5'
29420 3' -58.2 NC_006151.1 + 20096 0.67 0.724211
Target:  5'- -aUCUugGGcUGGGGGACgGGCGCCCcgGCGa -3'
miRNA:   3'- aaAGA--CC-ACCUCUUG-CCGCGGG--CGUg -5'
29420 3' -58.2 NC_006151.1 + 23026 0.66 0.791187
Target:  5'- ---gUGGUGGAGGcggcgaagaaGCgGGCGgCCGCGg -3'
miRNA:   3'- aaagACCACCUCU----------UG-CCGCgGGCGUg -5'
29420 3' -58.2 NC_006151.1 + 31427 0.67 0.704217
Target:  5'- ----aGGgGGGGGACGGgGUgCGCGCg -3'
miRNA:   3'- aaagaCCaCCUCUUGCCgCGgGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 31579 0.67 0.704217
Target:  5'- -aUCacg-GGGGGGCGGCGCgcuCCGCGCu -3'
miRNA:   3'- aaAGaccaCCUCUUGCCGCG---GGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 31616 0.67 0.743887
Target:  5'- --cCUGGgcGGGGAuGCcGCGCCgGCACg -3'
miRNA:   3'- aaaGACCa-CCUCU-UGcCGCGGgCGUG- -5'
29420 3' -58.2 NC_006151.1 + 31731 0.73 0.40094
Target:  5'- ----gGcGUGGAGA--GGCGCCCGCGCc -3'
miRNA:   3'- aaagaC-CACCUCUugCCGCGGGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 33958 0.75 0.286089
Target:  5'- -cUCgGGgcgGGAc-GCGGCGCCCGCGCg -3'
miRNA:   3'- aaAGaCCa--CCUcuUGCCGCGGGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 38195 0.72 0.418321
Target:  5'- --gCUGGUGcgcuacagcGuGGACGGgGCCCGCGCc -3'
miRNA:   3'- aaaGACCAC---------CuCUUGCCgCGGGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 40119 0.74 0.343864
Target:  5'- -cUCU-GUGGAGAucguCGGCGUCCGCGg -3'
miRNA:   3'- aaAGAcCACCUCUu---GCCGCGGGCGUg -5'
29420 3' -58.2 NC_006151.1 + 40557 0.67 0.734094
Target:  5'- ---gUGGUGGAagcGGcgGCGGCGgCCGCGg -3'
miRNA:   3'- aaagACCACCU---CU--UGCCGCgGGCGUg -5'
29420 3' -58.2 NC_006151.1 + 45072 0.7 0.531218
Target:  5'- ----cGGcUGGAGAGC-GCGCaCCGCGCg -3'
miRNA:   3'- aaagaCC-ACCUCUUGcCGCG-GGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.