miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29420 3' -58.2 NC_006151.1 + 139793 0.68 0.663563
Target:  5'- -gUCUGucGGAGAGCGcGCGCgCCGC-Cg -3'
miRNA:   3'- aaAGACcaCCUCUUGC-CGCG-GGCGuG- -5'
29420 3' -58.2 NC_006151.1 + 139625 0.67 0.724211
Target:  5'- ----cGGcUGGGGGccaucCGGCGCCgGCGCg -3'
miRNA:   3'- aaagaCC-ACCUCUu----GCCGCGGgCGUG- -5'
29420 3' -58.2 NC_006151.1 + 139547 0.68 0.64202
Target:  5'- ----aGGUcGGGGAgcgaggaGCGGCGCCCGguCc -3'
miRNA:   3'- aaagaCCA-CCUCU-------UGCCGCGGGCguG- -5'
29420 3' -58.2 NC_006151.1 + 138478 0.67 0.701194
Target:  5'- ----aGGUGGGGcaaucaugcuccucGGCgGGCGCCCGCuGCa -3'
miRNA:   3'- aaagaCCACCUC--------------UUG-CCGCGGGCG-UG- -5'
29420 3' -58.2 NC_006151.1 + 138173 0.66 0.753581
Target:  5'- cUUCgUGGcGGAcguGGccAUGGCGCCCGUGCu -3'
miRNA:   3'- aAAG-ACCaCCU---CU--UGCCGCGGGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 132148 0.69 0.601976
Target:  5'- ----cGGUGGuuGACGGCGCgcagCUGCGCg -3'
miRNA:   3'- aaagaCCACCucUUGCCGCG----GGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 132023 0.68 0.643047
Target:  5'- --cCUGGUGcGAGAgguagccgGCGGCGCgCgGCAg -3'
miRNA:   3'- aaaGACCAC-CUCU--------UGCCGCG-GgCGUg -5'
29420 3' -58.2 NC_006151.1 + 130892 0.7 0.561259
Target:  5'- ----cGGUGGAG-GCGGCGgCCGuCGCc -3'
miRNA:   3'- aaagaCCACCUCuUGCCGCgGGC-GUG- -5'
29420 3' -58.2 NC_006151.1 + 128259 0.66 0.772637
Target:  5'- ---gUGGUGGA-AGCGGCacuGCgCGCGCa -3'
miRNA:   3'- aaagACCACCUcUUGCCG---CGgGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 123473 0.68 0.632772
Target:  5'- ----cGGUGGAGAACGuGgGCCuccugcCGCACc -3'
miRNA:   3'- aaagaCCACCUCUUGC-CgCGG------GCGUG- -5'
29420 3' -58.2 NC_006151.1 + 120759 0.68 0.683976
Target:  5'- -gUCaUGGccUGGGu-GCGGCGCCCGCugGCg -3'
miRNA:   3'- aaAG-ACC--ACCUcuUGCCGCGGGCG--UG- -5'
29420 3' -58.2 NC_006151.1 + 120582 0.66 0.763168
Target:  5'- cUUCUcGGUGGAcuACGGCGCCauCAa -3'
miRNA:   3'- aAAGA-CCACCUcuUGCCGCGGgcGUg -5'
29420 3' -58.2 NC_006151.1 + 119759 0.67 0.743887
Target:  5'- -cUCUGGcGGAcguGGcCGGCGCgCGCAUc -3'
miRNA:   3'- aaAGACCaCCU---CUuGCCGCGgGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 111118 0.66 0.753581
Target:  5'- ----cGGcGGGGAGCGcGCGUCUGUGCg -3'
miRNA:   3'- aaagaCCaCCUCUUGC-CGCGGGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 110868 0.66 0.790273
Target:  5'- --gCUGGUGGcGAACaugggcuGGCGCUC-CACg -3'
miRNA:   3'- aaaGACCACCuCUUG-------CCGCGGGcGUG- -5'
29420 3' -58.2 NC_006151.1 + 106453 0.66 0.78198
Target:  5'- cUUCUcGGagacGGAGcuGugGGCGCCCuggGCGCa -3'
miRNA:   3'- aAAGA-CCa---CCUC--UugCCGCGGG---CGUG- -5'
29420 3' -58.2 NC_006151.1 + 106353 0.68 0.643047
Target:  5'- ----cGGUGGAcacgcuggacgcGGGCGcGCGCCCGcCGCg -3'
miRNA:   3'- aaagaCCACCU------------CUUGC-CGCGGGC-GUG- -5'
29420 3' -58.2 NC_006151.1 + 105259 0.68 0.653314
Target:  5'- --cCUGGgacgaggccugGGAGGACuuugGGCGCgCGCGCg -3'
miRNA:   3'- aaaGACCa----------CCUCUUG----CCGCGgGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 104901 0.67 0.734094
Target:  5'- ---gUGGUGGAc-GCGGCGgCgGCGCg -3'
miRNA:   3'- aaagACCACCUcuUGCCGCgGgCGUG- -5'
29420 3' -58.2 NC_006151.1 + 103665 0.67 0.714249
Target:  5'- ----cGGcGGAGAagGCGGCGCgCGCGg -3'
miRNA:   3'- aaagaCCaCCUCU--UGCCGCGgGCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.