miRNA display CGI


Results 21 - 40 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29420 3' -58.2 NC_006151.1 + 49558 0.72 0.436151
Target:  5'- ----cGGaGGAGAGCGGaugauggaGCCCGCGCu -3'
miRNA:   3'- aaagaCCaCCUCUUGCCg-------CGGGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 55373 0.7 0.515434
Target:  5'- ----aGGUgcgcgagcgcgagcaGGAGGuGCGGCGCCUGCGCg -3'
miRNA:   3'- aaagaCCA---------------CCUCU-UGCCGCGGGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 56592 0.66 0.753581
Target:  5'- --gCUGGUGcGGAcgcgccccgGCGGCGCgcucaCCGCGCc -3'
miRNA:   3'- aaaGACCACcUCU---------UGCCGCG-----GGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 56666 0.85 0.066268
Target:  5'- --gCUGGUGGAcGACGGCGCCgCGCGCg -3'
miRNA:   3'- aaaGACCACCUcUUGCCGCGG-GCGUG- -5'
29420 3' -58.2 NC_006151.1 + 59129 0.69 0.57138
Target:  5'- --gCUGccGGuGggUGGCGCCCGCGg -3'
miRNA:   3'- aaaGACcaCCuCuuGCCGCGGGCGUg -5'
29420 3' -58.2 NC_006151.1 + 63999 0.67 0.714249
Target:  5'- -gUCUGcGUGcGGuGCGGCGCCagGCGCc -3'
miRNA:   3'- aaAGAC-CACcUCuUGCCGCGGg-CGUG- -5'
29420 3' -58.2 NC_006151.1 + 64630 0.68 0.643047
Target:  5'- ----cGGccgcGGGGcGCGGCGcCCCGCGCa -3'
miRNA:   3'- aaagaCCa---CCUCuUGCCGC-GGGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 65820 0.68 0.683976
Target:  5'- ----cGGUGGAuGGGCGGCcGCgCCaGCGCg -3'
miRNA:   3'- aaagaCCACCU-CUUGCCG-CG-GG-CGUG- -5'
29420 3' -58.2 NC_006151.1 + 70087 0.67 0.713249
Target:  5'- -gUCUGcgcGUGGGcggcgaagggcgcGAGCGGguccaCGCCCGCGCg -3'
miRNA:   3'- aaAGAC---CACCU-------------CUUGCC-----GCGGGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 73050 0.69 0.601976
Target:  5'- ----cGGUGGGGGugcGCGGgGUCCGCGu -3'
miRNA:   3'- aaagaCCACCUCU---UGCCgCGGGCGUg -5'
29420 3' -58.2 NC_006151.1 + 77928 0.66 0.772637
Target:  5'- ---gUGGUGGuGAAgGGCGggCGCGCg -3'
miRNA:   3'- aaagACCACCuCUUgCCGCggGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 80952 0.68 0.632772
Target:  5'- ---aUGGUGGAGu-UGGCGCCgGC-Ca -3'
miRNA:   3'- aaagACCACCUCuuGCCGCGGgCGuG- -5'
29420 3' -58.2 NC_006151.1 + 86905 0.67 0.724211
Target:  5'- --gCUGGUGGucAACcaGCGCCCgGCGCc -3'
miRNA:   3'- aaaGACCACCucUUGc-CGCGGG-CGUG- -5'
29420 3' -58.2 NC_006151.1 + 89895 0.72 0.427181
Target:  5'- -cUCggcGGUGGGGu-CGGCGUCCGCGu -3'
miRNA:   3'- aaAGa--CCACCUCuuGCCGCGGGCGUg -5'
29420 3' -58.2 NC_006151.1 + 90736 0.66 0.752616
Target:  5'- ----cGGUGGc-GGCGGCGCCCucgggggcggcggGCACg -3'
miRNA:   3'- aaagaCCACCucUUGCCGCGGG-------------CGUG- -5'
29420 3' -58.2 NC_006151.1 + 91149 0.66 0.76697
Target:  5'- --cCUGGgggcGcGAGAGCgucaggcucacgucgGGCGCCCGCGa -3'
miRNA:   3'- aaaGACCa---C-CUCUUG---------------CCGCGGGCGUg -5'
29420 3' -58.2 NC_006151.1 + 95431 0.67 0.724211
Target:  5'- --gUUGGacgugGcGAGGGCGGCGCC-GCGCg -3'
miRNA:   3'- aaaGACCa----C-CUCUUGCCGCGGgCGUG- -5'
29420 3' -58.2 NC_006151.1 + 98211 0.73 0.40094
Target:  5'- ----gGGUcGAGugcgcGGCGGCGCCCGCGCg -3'
miRNA:   3'- aaagaCCAcCUC-----UUGCCGCGGGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 99088 0.66 0.753581
Target:  5'- -----cGUGGc--GCGGCGCCUGCGCa -3'
miRNA:   3'- aaagacCACCucuUGCCGCGGGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 100870 0.69 0.570366
Target:  5'- --aCUGGgccgccgugaaccUGGAGGugcugcgccGCGGCGCgCGCGCg -3'
miRNA:   3'- aaaGACC-------------ACCUCU---------UGCCGCGgGCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.