miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29420 3' -58.2 NC_006151.1 + 20096 0.67 0.724211
Target:  5'- -aUCUugGGcUGGGGGACgGGCGCCCcgGCGa -3'
miRNA:   3'- aaAGA--CC-ACCUCUUG-CCGCGGG--CGUg -5'
29420 3' -58.2 NC_006151.1 + 86905 0.67 0.724211
Target:  5'- --gCUGGUGGucAACcaGCGCCCgGCGCc -3'
miRNA:   3'- aaaGACCACCucUUGc-CGCGGG-CGUG- -5'
29420 3' -58.2 NC_006151.1 + 139625 0.67 0.724211
Target:  5'- ----cGGcUGGGGGccaucCGGCGCCgGCGCg -3'
miRNA:   3'- aaagaCC-ACCUCUu----GCCGCGGgCGUG- -5'
29420 3' -58.2 NC_006151.1 + 95431 0.67 0.724211
Target:  5'- --gUUGGacgugGcGAGGGCGGCGCC-GCGCg -3'
miRNA:   3'- aaaGACCa----C-CUCUUGCCGCGGgCGUG- -5'
29420 3' -58.2 NC_006151.1 + 63999 0.67 0.714249
Target:  5'- -gUCUGcGUGcGGuGCGGCGCCagGCGCc -3'
miRNA:   3'- aaAGAC-CACcUCuUGCCGCGGg-CGUG- -5'
29420 3' -58.2 NC_006151.1 + 103665 0.67 0.714249
Target:  5'- ----cGGcGGAGAagGCGGCGCgCGCGg -3'
miRNA:   3'- aaagaCCaCCUCU--UGCCGCGgGCGUg -5'
29420 3' -58.2 NC_006151.1 + 70087 0.67 0.713249
Target:  5'- -gUCUGcgcGUGGGcggcgaagggcgcGAGCGGguccaCGCCCGCGCg -3'
miRNA:   3'- aaAGAC---CACCU-------------CUUGCC-----GCGGGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 31427 0.67 0.704217
Target:  5'- ----aGGgGGGGGACGGgGUgCGCGCg -3'
miRNA:   3'- aaagaCCaCCUCUUGCCgCGgGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 31579 0.67 0.704217
Target:  5'- -aUCacg-GGGGGGCGGCGCgcuCCGCGCu -3'
miRNA:   3'- aaAGaccaCCUCUUGCCGCG---GGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 138478 0.67 0.701194
Target:  5'- ----aGGUGGGGcaaucaugcuccucGGCgGGCGCCCGCuGCa -3'
miRNA:   3'- aaagaCCACCUC--------------UUG-CCGCGGGCG-UG- -5'
29420 3' -58.2 NC_006151.1 + 8733 0.67 0.694122
Target:  5'- ----cGGUccgaGGAGGGgGGUGCCCGgGCg -3'
miRNA:   3'- aaagaCCA----CCUCUUgCCGCGGGCgUG- -5'
29420 3' -58.2 NC_006151.1 + 2489 0.68 0.683976
Target:  5'- ----cGGUGcccGAaGGCGGCGCCCGCGu -3'
miRNA:   3'- aaagaCCAC---CUcUUGCCGCGGGCGUg -5'
29420 3' -58.2 NC_006151.1 + 120759 0.68 0.683976
Target:  5'- -gUCaUGGccUGGGu-GCGGCGCCCGCugGCg -3'
miRNA:   3'- aaAG-ACC--ACCUcuUGCCGCGGGCG--UG- -5'
29420 3' -58.2 NC_006151.1 + 65820 0.68 0.683976
Target:  5'- ----cGGUGGAuGGGCGGCcGCgCCaGCGCg -3'
miRNA:   3'- aaagaCCACCU-CUUGCCG-CG-GG-CGUG- -5'
29420 3' -58.2 NC_006151.1 + 102546 0.68 0.673787
Target:  5'- ---gUGGUGGcgcgcgcgcGGGcccuguuuGCGcGCGCCCGCGCg -3'
miRNA:   3'- aaagACCACC---------UCU--------UGC-CGCGGGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 139793 0.68 0.663563
Target:  5'- -gUCUGucGGAGAGCGcGCGCgCCGC-Cg -3'
miRNA:   3'- aaAGACcaCCUCUUGC-CGCG-GGCGuG- -5'
29420 3' -58.2 NC_006151.1 + 105259 0.68 0.653314
Target:  5'- --cCUGGgacgaggccugGGAGGACuuugGGCGCgCGCGCg -3'
miRNA:   3'- aaaGACCa----------CCUCUUG----CCGCGgGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 106353 0.68 0.643047
Target:  5'- ----cGGUGGAcacgcuggacgcGGGCGcGCGCCCGcCGCg -3'
miRNA:   3'- aaagaCCACCU------------CUUGC-CGCGGGC-GUG- -5'
29420 3' -58.2 NC_006151.1 + 64630 0.68 0.643047
Target:  5'- ----cGGccgcGGGGcGCGGCGcCCCGCGCa -3'
miRNA:   3'- aaagaCCa---CCUCuUGCCGC-GGGCGUG- -5'
29420 3' -58.2 NC_006151.1 + 132023 0.68 0.643047
Target:  5'- --cCUGGUGcGAGAgguagccgGCGGCGCgCgGCAg -3'
miRNA:   3'- aaaGACCAC-CUCU--------UGCCGCG-GgCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.