miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29421 3' -61.2 NC_006151.1 + 80904 0.67 0.631324
Target:  5'- aUCAGggccuugacgUCGCCGCCGUGCa-GCGUc-- -3'
miRNA:   3'- -GGUCa---------AGCGGCGGCACGggCGCGaga -5'
29421 3' -61.2 NC_006151.1 + 49385 0.67 0.631324
Target:  5'- gCCAuccgUCGCCGCUG-GCCCGCacGCcCUu -3'
miRNA:   3'- -GGUca--AGCGGCGGCaCGGGCG--CGaGA- -5'
29421 3' -61.2 NC_006151.1 + 48190 0.67 0.631324
Target:  5'- gCCAucuucgaGCCGCCGgucacGCCCGCGCc-- -3'
miRNA:   3'- -GGUcaag---CGGCGGCa----CGGGCGCGaga -5'
29421 3' -61.2 NC_006151.1 + 70629 0.67 0.621455
Target:  5'- uCCucggCGgCGCCGUGgCCGCGCg-- -3'
miRNA:   3'- -GGucaaGCgGCGGCACgGGCGCGaga -5'
29421 3' -61.2 NC_006151.1 + 55450 0.67 0.621455
Target:  5'- aCCGG--CGCCGCCG-GCCC-CGC-Cg -3'
miRNA:   3'- -GGUCaaGCGGCGGCaCGGGcGCGaGa -5'
29421 3' -61.2 NC_006151.1 + 117362 0.67 0.621455
Target:  5'- gUAGUggCGCaCGCCGUacacgugcacgGCCaCGCGCUUg -3'
miRNA:   3'- gGUCAa-GCG-GCGGCA-----------CGG-GCGCGAGa -5'
29421 3' -61.2 NC_006151.1 + 48090 0.67 0.621455
Target:  5'- aCCAGccgcgaugUCGCCGCuCGUGgCgGUGCUg- -3'
miRNA:   3'- -GGUCa-------AGCGGCG-GCACgGgCGCGAga -5'
29421 3' -61.2 NC_006151.1 + 69473 0.67 0.619482
Target:  5'- gCCGGcaccgUCGCCGCCGccucgagcgccCCCGCGC-Cg -3'
miRNA:   3'- -GGUCa----AGCGGCGGCac---------GGGCGCGaGa -5'
29421 3' -61.2 NC_006151.1 + 5872 0.67 0.611593
Target:  5'- cCCGGg--GCCGCCGgggGCCCcgGC-CUCUg -3'
miRNA:   3'- -GGUCaagCGGCGGCa--CGGG--CGcGAGA- -5'
29421 3' -61.2 NC_006151.1 + 99670 0.67 0.611593
Target:  5'- gCAGa--GCCGCUGggGCCUGCGCg-- -3'
miRNA:   3'- gGUCaagCGGCGGCa-CGGGCGCGaga -5'
29421 3' -61.2 NC_006151.1 + 87507 0.67 0.611593
Target:  5'- uUCAGgcCGCCGCCccggccgcGCCCGC-CUCg -3'
miRNA:   3'- -GGUCaaGCGGCGGca------CGGGCGcGAGa -5'
29421 3' -61.2 NC_006151.1 + 76864 0.67 0.611593
Target:  5'- gCCAGccgCGCCGCCGccaggaGCCCcaGCGC-Cg -3'
miRNA:   3'- -GGUCaa-GCGGCGGCa-----CGGG--CGCGaGa -5'
29421 3' -61.2 NC_006151.1 + 52369 0.67 0.611593
Target:  5'- gCCGGcgCGCCcCCGggGCCCGCGg--- -3'
miRNA:   3'- -GGUCaaGCGGcGGCa-CGGGCGCgaga -5'
29421 3' -61.2 NC_006151.1 + 132082 0.67 0.610608
Target:  5'- aCCAGgUCGgCGCCGUccuccucgaugagGCCgGCGCg-- -3'
miRNA:   3'- -GGUCaAGCgGCGGCA-------------CGGgCGCGaga -5'
29421 3' -61.2 NC_006151.1 + 123220 0.67 0.607652
Target:  5'- gCGGUg-GCCGCCGgguuccgcgcacgGCgCGCGUUCUg -3'
miRNA:   3'- gGUCAagCGGCGGCa------------CGgGCGCGAGA- -5'
29421 3' -61.2 NC_006151.1 + 84184 0.67 0.601746
Target:  5'- uCCucgcCGCCGCCGUGCCCcCGggCg -3'
miRNA:   3'- -GGucaaGCGGCGGCACGGGcGCgaGa -5'
29421 3' -61.2 NC_006151.1 + 52396 0.67 0.601746
Target:  5'- gCGGcgggCGCCGCCGcGCCCgagaagucaaaGUGCUCc -3'
miRNA:   3'- gGUCaa--GCGGCGGCaCGGG-----------CGCGAGa -5'
29421 3' -61.2 NC_006151.1 + 113549 0.67 0.601746
Target:  5'- --uGcgCGCCGCgG-GCCCGCGCg-- -3'
miRNA:   3'- gguCaaGCGGCGgCaCGGGCGCGaga -5'
29421 3' -61.2 NC_006151.1 + 73938 0.67 0.601746
Target:  5'- gCAGcgaGCCGUCGUGCgUGCGCa-- -3'
miRNA:   3'- gGUCaagCGGCGGCACGgGCGCGaga -5'
29421 3' -61.2 NC_006151.1 + 28537 0.67 0.601746
Target:  5'- uCCGGgaccgGCCaaugggggaGCCGUGCCCGCGUc-- -3'
miRNA:   3'- -GGUCaag--CGG---------CGGCACGGGCGCGaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.