miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29421 3' -61.2 NC_006151.1 + 101642 1.09 0.000907
Target:  5'- aCCAGUUCGCCGCCGUGCCCGCGCUCUa -3'
miRNA:   3'- -GGUCAAGCGGCGGCACGGGCGCGAGA- -5'
29421 3' -61.2 NC_006151.1 + 109105 0.79 0.134605
Target:  5'- cCCAGUgaggcgaGCCGCCG-GCCCGCGCcCg -3'
miRNA:   3'- -GGUCAag-----CGGCGGCaCGGGCGCGaGa -5'
29421 3' -61.2 NC_006151.1 + 87310 0.78 0.141475
Target:  5'- gCCcGUggCGCaCGCCGUGCCgGCGCUCc -3'
miRNA:   3'- -GGuCAa-GCG-GCGGCACGGgCGCGAGa -5'
29421 3' -61.2 NC_006151.1 + 86051 0.78 0.145029
Target:  5'- gCAGUUCGCCGCCGccugaGCCCGCaGuCUCc -3'
miRNA:   3'- gGUCAAGCGGCGGCa----CGGGCG-C-GAGa -5'
29421 3' -61.2 NC_006151.1 + 109800 0.78 0.148664
Target:  5'- gCCGGaguuugCGCCGCCG-GcCCCGCGCUCc -3'
miRNA:   3'- -GGUCaa----GCGGCGGCaC-GGGCGCGAGa -5'
29421 3' -61.2 NC_006151.1 + 5742 0.78 0.156184
Target:  5'- uCCgAGgccgCGCCGCCG-GCCCGgGCUCa -3'
miRNA:   3'- -GG-UCaa--GCGGCGGCaCGGGCgCGAGa -5'
29421 3' -61.2 NC_006151.1 + 66557 0.76 0.194429
Target:  5'- gCGGccgCGCCGCCGUGgaCCCGgCGCUCg -3'
miRNA:   3'- gGUCaa-GCGGCGGCAC--GGGC-GCGAGa -5'
29421 3' -61.2 NC_006151.1 + 135893 0.74 0.254399
Target:  5'- cCCGuGUucgUCGCCGCCGcgaccccggcggucgUGCgCGCGCUCUg -3'
miRNA:   3'- -GGU-CA---AGCGGCGGC---------------ACGgGCGCGAGA- -5'
29421 3' -61.2 NC_006151.1 + 39963 0.74 0.270047
Target:  5'- cCCGGgcgccgUCGCCGCCGcggGCgccccgccggCCGUGCUCUg -3'
miRNA:   3'- -GGUCa-----AGCGGCGGCa--CG----------GGCGCGAGA- -5'
29421 3' -61.2 NC_006151.1 + 121173 0.74 0.270047
Target:  5'- gCCGuGUaCGCgGCCGUGCUgcaCGCGCUCg -3'
miRNA:   3'- -GGU-CAaGCGgCGGCACGG---GCGCGAGa -5'
29421 3' -61.2 NC_006151.1 + 11645 0.73 0.31601
Target:  5'- aCAGcgCGCaCGCCGaccGCCCGCGUUUg -3'
miRNA:   3'- gGUCaaGCG-GCGGCa--CGGGCGCGAGa -5'
29421 3' -61.2 NC_006151.1 + 58550 0.73 0.323038
Target:  5'- cCCGGUcgucuccucuUCGCCGCCGccGCCCGCcgGCgUCg -3'
miRNA:   3'- -GGUCA----------AGCGGCGGCa-CGGGCG--CG-AGa -5'
29421 3' -61.2 NC_006151.1 + 5681 0.72 0.344818
Target:  5'- gCGGgcCcCCGCCGUGCCgGCGCUg- -3'
miRNA:   3'- gGUCaaGcGGCGGCACGGgCGCGAga -5'
29421 3' -61.2 NC_006151.1 + 106500 0.72 0.352309
Target:  5'- gCCAGcggcuggCGCgCGCCGUGCCgggCGCGCUg- -3'
miRNA:   3'- -GGUCaa-----GCG-GCGGCACGG---GCGCGAga -5'
29421 3' -61.2 NC_006151.1 + 37013 0.72 0.359914
Target:  5'- cCCGGgccccCGCCGCCGccGCgCgGCGCUCg -3'
miRNA:   3'- -GGUCaa---GCGGCGGCa-CG-GgCGCGAGa -5'
29421 3' -61.2 NC_006151.1 + 57111 0.72 0.367633
Target:  5'- gCAGcgcgCGCCGCCGcGCCCgGCGgUCg -3'
miRNA:   3'- gGUCaa--GCGGCGGCaCGGG-CGCgAGa -5'
29421 3' -61.2 NC_006151.1 + 17074 0.71 0.375465
Target:  5'- cCCGGgcCGCCGCCGggucagGCgCGCGCcCg -3'
miRNA:   3'- -GGUCaaGCGGCGGCa-----CGgGCGCGaGa -5'
29421 3' -61.2 NC_006151.1 + 104177 0.71 0.375465
Target:  5'- -----cCGCCGCCGaGCgCGCGCUCg -3'
miRNA:   3'- ggucaaGCGGCGGCaCGgGCGCGAGa -5'
29421 3' -61.2 NC_006151.1 + 101104 0.71 0.407901
Target:  5'- cCCGGgucgggCGUC-UCGUGCCUGCGCUCc -3'
miRNA:   3'- -GGUCaa----GCGGcGGCACGGGCGCGAGa -5'
29421 3' -61.2 NC_006151.1 + 56528 0.71 0.407901
Target:  5'- cCCucUUCGCCGCCGgguucggGCCCcUGCUCg -3'
miRNA:   3'- -GGucAAGCGGCGGCa------CGGGcGCGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.