miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29421 3' -61.2 NC_006151.1 + 654 0.66 0.680531
Target:  5'- uCCGGggCGCgGCCGgggcggGCuCCGCGgaUCg -3'
miRNA:   3'- -GGUCaaGCGgCGGCa-----CG-GGCGCg-AGa -5'
29421 3' -61.2 NC_006151.1 + 2476 0.66 0.700009
Target:  5'- gCGGUUgGCCGCgCgGUGCCCGaagGCg-- -3'
miRNA:   3'- gGUCAAgCGGCG-G-CACGGGCg--CGaga -5'
29421 3' -61.2 NC_006151.1 + 3877 0.68 0.572355
Target:  5'- cCCGc--CGCCGCCGgcGCCgGCGCUg- -3'
miRNA:   3'- -GGUcaaGCGGCGGCa-CGGgCGCGAga -5'
29421 3' -61.2 NC_006151.1 + 5681 0.72 0.344818
Target:  5'- gCGGgcCcCCGCCGUGCCgGCGCUg- -3'
miRNA:   3'- gGUCaaGcGGCGGCACGGgCGCGAga -5'
29421 3' -61.2 NC_006151.1 + 5742 0.78 0.156184
Target:  5'- uCCgAGgccgCGCCGCCG-GCCCGgGCUCa -3'
miRNA:   3'- -GG-UCaa--GCGGCGGCaCGGGCgCGAGa -5'
29421 3' -61.2 NC_006151.1 + 5872 0.67 0.611593
Target:  5'- cCCGGg--GCCGCCGgggGCCCcgGC-CUCUg -3'
miRNA:   3'- -GGUCaagCGGCGGCa--CGGG--CGcGAGA- -5'
29421 3' -61.2 NC_006151.1 + 7636 0.68 0.582121
Target:  5'- gCGG-UCGCCccacCCGcGCCuCGCGCUCg -3'
miRNA:   3'- gGUCaAGCGGc---GGCaCGG-GCGCGAGa -5'
29421 3' -61.2 NC_006151.1 + 11645 0.73 0.31601
Target:  5'- aCAGcgCGCaCGCCGaccGCCCGCGUUUg -3'
miRNA:   3'- gGUCaaGCG-GCGGCa--CGGGCGCGAGa -5'
29421 3' -61.2 NC_006151.1 + 17074 0.71 0.375465
Target:  5'- cCCGGgcCGCCGCCGggucagGCgCGCGCcCg -3'
miRNA:   3'- -GGUCaaGCGGCGGCa-----CGgGCGCGaGa -5'
29421 3' -61.2 NC_006151.1 + 19479 0.69 0.486869
Target:  5'- gCAGguaGUCGCCGaUGCCC-CGCUCc -3'
miRNA:   3'- gGUCaagCGGCGGC-ACGGGcGCGAGa -5'
29421 3' -61.2 NC_006151.1 + 21270 0.7 0.450817
Target:  5'- aCCAGgagcgCGCCcaucGCgGUGCCCGUGC-Cg -3'
miRNA:   3'- -GGUCaa---GCGG----CGgCACGGGCGCGaGa -5'
29421 3' -61.2 NC_006151.1 + 24748 0.67 0.641194
Target:  5'- aCCAGgcaCGUCGCCGgGCCCcggGCGagcaUCUg -3'
miRNA:   3'- -GGUCaa-GCGGCGGCaCGGG---CGCg---AGA- -5'
29421 3' -61.2 NC_006151.1 + 25410 0.66 0.670733
Target:  5'- aCGGgggCGCCGCCGccCCaCGCGCg-- -3'
miRNA:   3'- gGUCaa-GCGGCGGCacGG-GCGCGaga -5'
29421 3' -61.2 NC_006151.1 + 28537 0.67 0.601746
Target:  5'- uCCGGgaccgGCCaaugggggaGCCGUGCCCGCGUc-- -3'
miRNA:   3'- -GGUCaag--CGG---------CGGCACGGGCGCGaga -5'
29421 3' -61.2 NC_006151.1 + 30910 0.67 0.59192
Target:  5'- gCGGUagCGcCCGCgGgcgGCCCGCGCg-- -3'
miRNA:   3'- gGUCAa-GC-GGCGgCa--CGGGCGCGaga -5'
29421 3' -61.2 NC_006151.1 + 31015 0.68 0.552948
Target:  5'- -aGGgggUCGCCGCCGcgGCCCuCGCg-- -3'
miRNA:   3'- ggUCa--AGCGGCGGCa-CGGGcGCGaga -5'
29421 3' -61.2 NC_006151.1 + 31189 0.68 0.582121
Target:  5'- aCGGUcCGCCGCacaGUgugGCCCGCGUcCa -3'
miRNA:   3'- gGUCAaGCGGCGg--CA---CGGGCGCGaGa -5'
29421 3' -61.2 NC_006151.1 + 37013 0.72 0.359914
Target:  5'- cCCGGgccccCGCCGCCGccGCgCgGCGCUCg -3'
miRNA:   3'- -GGUCaa---GCGGCGGCa-CG-GgCGCGAGa -5'
29421 3' -61.2 NC_006151.1 + 37860 0.66 0.670733
Target:  5'- cCCGGgccgCGCCGCgGaccCCCGCGC-Cg -3'
miRNA:   3'- -GGUCaa--GCGGCGgCac-GGGCGCGaGa -5'
29421 3' -61.2 NC_006151.1 + 38267 0.66 0.690293
Target:  5'- cCCGGccaaCGUgGCCGcgGCCCG-GCUCg -3'
miRNA:   3'- -GGUCaa--GCGgCGGCa-CGGGCgCGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.