miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29422 3' -56.2 NC_006151.1 + 100388 1.09 0.002971
Target:  5'- cCGAGGUCAACACGCACCGCUCGGACAu -3'
miRNA:   3'- -GCUCCAGUUGUGCGUGGCGAGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 75607 0.81 0.201169
Target:  5'- aCGAGGUCGGCGCGCACgCGCgccgagcccaCGGGCu -3'
miRNA:   3'- -GCUCCAGUUGUGCGUG-GCGa---------GCCUGu -5'
29422 3' -56.2 NC_006151.1 + 89864 0.78 0.29529
Target:  5'- gGAcGGUCGccucguAgACGCGCCGCUCGGGCu -3'
miRNA:   3'- gCU-CCAGU------UgUGCGUGGCGAGCCUGu -5'
29422 3' -56.2 NC_006151.1 + 84747 0.78 0.309209
Target:  5'- uCGAGGagaCGGCGCGCGCCGCcgaggaggCGGACGc -3'
miRNA:   3'- -GCUCCa--GUUGUGCGUGGCGa-------GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 85430 0.76 0.377947
Target:  5'- aCGAGGUCAAC-CGCGCCGCggccgccuuccUGGGCc -3'
miRNA:   3'- -GCUCCAGUUGuGCGUGGCGa----------GCCUGu -5'
29422 3' -56.2 NC_006151.1 + 45442 0.75 0.411627
Target:  5'- gCGGGcGUC-GCACGCACCGCg-GGGCGg -3'
miRNA:   3'- -GCUC-CAGuUGUGCGUGGCGagCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 57490 0.75 0.429149
Target:  5'- uCGcAGG-CGACGCGCACgCGCUCGGccGCGg -3'
miRNA:   3'- -GC-UCCaGUUGUGCGUG-GCGAGCC--UGU- -5'
29422 3' -56.2 NC_006151.1 + 73599 0.75 0.429149
Target:  5'- cCGGGGUgCAGCugGCGCCGCagcUGGugGg -3'
miRNA:   3'- -GCUCCA-GUUGugCGUGGCGa--GCCugU- -5'
29422 3' -56.2 NC_006151.1 + 38770 0.75 0.447104
Target:  5'- cCGAGGaCGACcggcuccgGCGC-CCGCUCGGGCc -3'
miRNA:   3'- -GCUCCaGUUG--------UGCGuGGCGAGCCUGu -5'
29422 3' -56.2 NC_006151.1 + 118363 0.74 0.465468
Target:  5'- gCGAGG-CGGCGCGCGCCcGCUuCGGGu- -3'
miRNA:   3'- -GCUCCaGUUGUGCGUGG-CGA-GCCUgu -5'
29422 3' -56.2 NC_006151.1 + 64554 0.74 0.493726
Target:  5'- gCGAGGcCGugGCGCGCCaGCUC-GACGa -3'
miRNA:   3'- -GCUCCaGUugUGCGUGG-CGAGcCUGU- -5'
29422 3' -56.2 NC_006151.1 + 125866 0.73 0.512993
Target:  5'- uCGAGGUguACACGCGCgaggaGCUCGccGACAc -3'
miRNA:   3'- -GCUCCAguUGUGCGUGg----CGAGC--CUGU- -5'
29422 3' -56.2 NC_006151.1 + 98991 0.73 0.522742
Target:  5'- gCGAGGUCAACGCcaCGCCGCgcaCGGcCGu -3'
miRNA:   3'- -GCUCCAGUUGUGc-GUGGCGa--GCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 67461 0.73 0.522742
Target:  5'- gGGGGUCGcagaGCGCGCGCaGCagCGGGCAc -3'
miRNA:   3'- gCUCCAGU----UGUGCGUGgCGa-GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 3694 0.73 0.532562
Target:  5'- cCGGGcGcgCGGCGCuucuucuuGCGCCGCUCGGGCGc -3'
miRNA:   3'- -GCUC-Ca-GUUGUG--------CGUGGCGAGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 57190 0.73 0.532562
Target:  5'- uCGGGGUCGugGCGCGaggcgaaggcCCGCUC-GACGa -3'
miRNA:   3'- -GCUCCAGUugUGCGU----------GGCGAGcCUGU- -5'
29422 3' -56.2 NC_006151.1 + 21465 0.73 0.542447
Target:  5'- gCGuGGUCc-CGCGuCGCCgGCUCGGGCAg -3'
miRNA:   3'- -GCuCCAGuuGUGC-GUGG-CGAGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 20148 0.72 0.582528
Target:  5'- gCGGGGgCGGCGCGUggACCGC-CGGGCc -3'
miRNA:   3'- -GCUCCaGUUGUGCG--UGGCGaGCCUGu -5'
29422 3' -56.2 NC_006151.1 + 123680 0.72 0.592653
Target:  5'- uCGAGGUCcuccGCGCGgAUCGCUucgcCGGACGc -3'
miRNA:   3'- -GCUCCAGu---UGUGCgUGGCGA----GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 15387 0.72 0.602807
Target:  5'- gCGAcGUCGACgaggACGaCGCCgGCUCGGACAc -3'
miRNA:   3'- -GCUcCAGUUG----UGC-GUGG-CGAGCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.