miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29422 3' -56.2 NC_006151.1 + 1845 0.68 0.799587
Target:  5'- cCGAGGggacCGAgGC-CGCCGCcgCGGACGc -3'
miRNA:   3'- -GCUCCa---GUUgUGcGUGGCGa-GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 2116 0.71 0.623171
Target:  5'- gCGGGGcCGGC-CGuCGCCGCcgCGGACGc -3'
miRNA:   3'- -GCUCCaGUUGuGC-GUGGCGa-GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 2313 0.67 0.872176
Target:  5'- cCGGGGUCAGCACcagcgggGCGgCCucgGCgUCGGGCu -3'
miRNA:   3'- -GCUCCAGUUGUG-------CGU-GG---CG-AGCCUGu -5'
29422 3' -56.2 NC_006151.1 + 3352 0.66 0.900209
Target:  5'- aCGAGG---GCGCGgGCCacCUCGGGCGg -3'
miRNA:   3'- -GCUCCaguUGUGCgUGGc-GAGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 3448 0.66 0.900209
Target:  5'- cCGccGUCGGgCGCGgGgUGCUCGGGCAu -3'
miRNA:   3'- -GCucCAGUU-GUGCgUgGCGAGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 3694 0.73 0.532562
Target:  5'- cCGGGcGcgCGGCGCuucuucuuGCGCCGCUCGGGCGc -3'
miRNA:   3'- -GCUC-Ca-GUUGUG--------CGUGGCGAGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 4104 0.68 0.799587
Target:  5'- aCGAGGgCGACAgaguccgcggccUGcCGCCGCUCGGcCGg -3'
miRNA:   3'- -GCUCCaGUUGU------------GC-GUGGCGAGCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 5620 0.66 0.906469
Target:  5'- gGAGGgggCGcCGC-CGCCGC-CGGGCGc -3'
miRNA:   3'- gCUCCa--GUuGUGcGUGGCGaGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 5736 0.71 0.663918
Target:  5'- cCGGGGUCcgaGGC-CGCGCCGCcggccCGGGCu -3'
miRNA:   3'- -GCUCCAG---UUGuGCGUGGCGa----GCCUGu -5'
29422 3' -56.2 NC_006151.1 + 8117 0.67 0.834013
Target:  5'- gGGGGUCGGaGCGCGgaccCCGCcCGGugGg -3'
miRNA:   3'- gCUCCAGUUgUGCGU----GGCGaGCCugU- -5'
29422 3' -56.2 NC_006151.1 + 8326 0.67 0.834013
Target:  5'- cCGGGGcgcgcgggccUCGAuCGCGC-CCGC-CGGACGc -3'
miRNA:   3'- -GCUCC----------AGUU-GUGCGuGGCGaGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 10917 0.68 0.825661
Target:  5'- cCGGGGUCGGgccCACgGCGCCGagggUGGGCGc -3'
miRNA:   3'- -GCUCCAGUU---GUG-CGUGGCga--GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 14154 0.67 0.842184
Target:  5'- aCGAGGagc-CGCGCcCCGCUCgaGGACGc -3'
miRNA:   3'- -GCUCCaguuGUGCGuGGCGAG--CCUGU- -5'
29422 3' -56.2 NC_006151.1 + 15387 0.72 0.602807
Target:  5'- gCGAcGUCGACgaggACGaCGCCgGCUCGGACAc -3'
miRNA:   3'- -GCUcCAGUUG----UGC-GUGG-CGAGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 17087 0.66 0.900209
Target:  5'- -cGGGUCAgGCGCGCGCCcgUCGGGg- -3'
miRNA:   3'- gcUCCAGU-UGUGCGUGGcgAGCCUgu -5'
29422 3' -56.2 NC_006151.1 + 19652 0.7 0.674062
Target:  5'- uCGAGGgugaAGUugGCGCC-CUCGGACAc -3'
miRNA:   3'- -GCUCCag--UUGugCGUGGcGAGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 19769 0.68 0.790584
Target:  5'- uCGAGGUCAu--CGuCGCCGgcCUCGGugGa -3'
miRNA:   3'- -GCUCCAGUuguGC-GUGGC--GAGCCugU- -5'
29422 3' -56.2 NC_006151.1 + 20148 0.72 0.582528
Target:  5'- gCGGGGgCGGCGCGUggACCGC-CGGGCc -3'
miRNA:   3'- -GCUCCaGUUGUGCG--UGGCGaGCCUGu -5'
29422 3' -56.2 NC_006151.1 + 20889 0.68 0.807562
Target:  5'- uGGGGUCGAggcgcagcagcucCACGCGCCcgcuguaguuGCUCGG-CGa -3'
miRNA:   3'- gCUCCAGUU-------------GUGCGUGG----------CGAGCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 21465 0.73 0.542447
Target:  5'- gCGuGGUCc-CGCGuCGCCgGCUCGGGCAg -3'
miRNA:   3'- -GCuCCAGuuGUGC-GUGG-CGAGCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.