miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29422 5' -65.1 NC_006151.1 + 89506 0.67 0.382448
Target:  5'- cGCGCGGGuguGGCGCa--GCGGaCGUGGUc -3'
miRNA:   3'- cUGCGCCC---CCGCGacgCGCC-GCACUA- -5'
29422 5' -65.1 NC_006151.1 + 105689 0.68 0.374592
Target:  5'- cGGCGCGGGGccgaCGCcgGCGCGGCc---- -3'
miRNA:   3'- -CUGCGCCCCc---GCGa-CGCGCCGcacua -5'
29422 5' -65.1 NC_006151.1 + 5343 0.68 0.374592
Target:  5'- --gGCGGaGGGCGCccucuccgGCGCGGCGc--- -3'
miRNA:   3'- cugCGCC-CCCGCGa-------CGCGCCGCacua -5'
29422 5' -65.1 NC_006151.1 + 103630 0.68 0.366845
Target:  5'- cGACGCGGuGGCgGCgGCGCuGGCG-GAc -3'
miRNA:   3'- -CUGCGCCcCCG-CGaCGCG-CCGCaCUa -5'
29422 5' -65.1 NC_006151.1 + 82175 0.68 0.366845
Target:  5'- aGCGcCGGGGGCGCgaucaUGCGCauccgcucGGCG-GAg -3'
miRNA:   3'- cUGC-GCCCCCGCG-----ACGCG--------CCGCaCUa -5'
29422 5' -65.1 NC_006151.1 + 87879 0.68 0.366845
Target:  5'- cGACGUGGGGGgggaaCGC-GCGgGGCGUc-- -3'
miRNA:   3'- -CUGCGCCCCC-----GCGaCGCgCCGCAcua -5'
29422 5' -65.1 NC_006151.1 + 106366 0.68 0.366845
Target:  5'- gGACGCGGGcGCGCgcccGcCGCGGCGc--- -3'
miRNA:   3'- -CUGCGCCCcCGCGa---C-GCGCCGCacua -5'
29422 5' -65.1 NC_006151.1 + 19058 0.68 0.366845
Target:  5'- gGGCGCaGGcacucGGGCGC-GCGCGG-GUGGUa -3'
miRNA:   3'- -CUGCG-CC-----CCCGCGaCGCGCCgCACUA- -5'
29422 5' -65.1 NC_006151.1 + 96732 0.68 0.366845
Target:  5'- gGAgGCGGcGGGCGCgacgacggagGCcaugGCGGCGUGu- -3'
miRNA:   3'- -CUgCGCC-CCCGCGa---------CG----CGCCGCACua -5'
29422 5' -65.1 NC_006151.1 + 19967 0.68 0.362251
Target:  5'- -uCGCGGGGGUGCccagguuuaaaacgGCGCGGaCG-GAg -3'
miRNA:   3'- cuGCGCCCCCGCGa-------------CGCGCC-GCaCUa -5'
29422 5' -65.1 NC_006151.1 + 95303 0.68 0.35921
Target:  5'- cGCGCGGcccGGCGCaGCGCGGCa---- -3'
miRNA:   3'- cUGCGCCc--CCGCGaCGCGCCGcacua -5'
29422 5' -65.1 NC_006151.1 + 25295 0.68 0.35921
Target:  5'- -cCGCGGGGaCGUgggcgaacggGUGCGGUGUGAa -3'
miRNA:   3'- cuGCGCCCCcGCGa---------CGCGCCGCACUa -5'
29422 5' -65.1 NC_006151.1 + 18696 0.68 0.35921
Target:  5'- cGCGCGGGcGGCGCcgGCGU--CGUGAc -3'
miRNA:   3'- cUGCGCCC-CCGCGa-CGCGccGCACUa -5'
29422 5' -65.1 NC_006151.1 + 135013 0.68 0.351687
Target:  5'- gGGCGCGGGGGgGCaGCaGCGGgGc--- -3'
miRNA:   3'- -CUGCGCCCCCgCGaCG-CGCCgCacua -5'
29422 5' -65.1 NC_006151.1 + 141749 0.68 0.336978
Target:  5'- gGGCGCGGGGcGCGC-GCcccgGUGGCGUc-- -3'
miRNA:   3'- -CUGCGCCCC-CGCGaCG----CGCCGCAcua -5'
29422 5' -65.1 NC_006151.1 + 30610 0.68 0.336978
Target:  5'- aACGCGGGcGGUcggcgugcgcGCUGUGCGG-GUGGg -3'
miRNA:   3'- cUGCGCCC-CCG----------CGACGCGCCgCACUa -5'
29422 5' -65.1 NC_006151.1 + 21428 0.68 0.329793
Target:  5'- gGGCcuCGGGGGuCGCgGCGUGGgGUGGc -3'
miRNA:   3'- -CUGc-GCCCCC-GCGaCGCGCCgCACUa -5'
29422 5' -65.1 NC_006151.1 + 104276 0.69 0.322722
Target:  5'- cGGCgGCGGGcccgccgcugcaGGCGCUGCaGCGGC-UGAc -3'
miRNA:   3'- -CUG-CGCCC------------CCGCGACG-CGCCGcACUa -5'
29422 5' -65.1 NC_006151.1 + 68768 0.69 0.322722
Target:  5'- --gGCGGuGGCGC-GCGCGGCGaGGUg -3'
miRNA:   3'- cugCGCCcCCGCGaCGCGCCGCaCUA- -5'
29422 5' -65.1 NC_006151.1 + 135121 0.69 0.315764
Target:  5'- cGCGCGGGGcGgGCUGgGCGGgGa--- -3'
miRNA:   3'- cUGCGCCCC-CgCGACgCGCCgCacua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.