miRNA display CGI


Results 21 - 40 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29422 5' -65.1 NC_006151.1 + 21313 0.66 0.457865
Target:  5'- --aGCGGuGGCGCgagacgcccgGCGCGGCGggGGUc -3'
miRNA:   3'- cugCGCCcCCGCGa---------CGCGCCGCa-CUA- -5'
29422 5' -65.1 NC_006151.1 + 21428 0.68 0.329793
Target:  5'- gGGCcuCGGGGGuCGCgGCGUGGgGUGGc -3'
miRNA:   3'- -CUGc-GCCCCC-GCGaCGCGCCgCACUa -5'
29422 5' -65.1 NC_006151.1 + 21585 0.67 0.382448
Target:  5'- cGCGCGGGGuCGaugGCGUacGGCGUGGc -3'
miRNA:   3'- cUGCGCCCCcGCga-CGCG--CCGCACUa -5'
29422 5' -65.1 NC_006151.1 + 23016 0.71 0.224847
Target:  5'- gGGCGCGGGGGUGgUGgagGCGGCGa--- -3'
miRNA:   3'- -CUGCGCCCCCGCgACg--CGCCGCacua -5'
29422 5' -65.1 NC_006151.1 + 25295 0.68 0.35921
Target:  5'- -cCGCGGGGaCGUgggcgaacggGUGCGGUGUGAa -3'
miRNA:   3'- cuGCGCCCCcGCGa---------CGCGCCGCACUa -5'
29422 5' -65.1 NC_006151.1 + 30610 0.68 0.336978
Target:  5'- aACGCGGGcGGUcggcgugcgcGCUGUGCGG-GUGGg -3'
miRNA:   3'- cUGCGCCC-CCG----------CGACGCGCCgCACUa -5'
29422 5' -65.1 NC_006151.1 + 33076 0.66 0.457865
Target:  5'- aGACGgaGGGGGCGaggGCG-GGCGgugGAg -3'
miRNA:   3'- -CUGCg-CCCCCGCga-CGCgCCGCa--CUa -5'
29422 5' -65.1 NC_006151.1 + 39269 0.66 0.457865
Target:  5'- aACGCccaGGGGGUGCUGCugcucuCGGCGcGGg -3'
miRNA:   3'- cUGCG---CCCCCGCGACGc-----GCCGCaCUa -5'
29422 5' -65.1 NC_006151.1 + 39338 0.67 0.390413
Target:  5'- -uCGCGGcucGGCGCgGCGCGGCGc--- -3'
miRNA:   3'- cuGCGCCc--CCGCGaCGCGCCGCacua -5'
29422 5' -65.1 NC_006151.1 + 44393 0.66 0.463174
Target:  5'- -cCGCGGGGGCGCcgaggagggagggGCGC-GUGUGc- -3'
miRNA:   3'- cuGCGCCCCCGCGa------------CGCGcCGCACua -5'
29422 5' -65.1 NC_006151.1 + 50462 0.66 0.484725
Target:  5'- -cCGCGGGcgcucGCGCcaGCGCGGCGcGAc -3'
miRNA:   3'- cuGCGCCCc----CGCGa-CGCGCCGCaCUa -5'
29422 5' -65.1 NC_006151.1 + 54412 0.67 0.423335
Target:  5'- cGGCGCcGaGGCGCUgGCGCGGCGc--- -3'
miRNA:   3'- -CUGCGcCcCCGCGA-CGCGCCGCacua -5'
29422 5' -65.1 NC_006151.1 + 54642 0.67 0.406665
Target:  5'- --aGCGGcGGCGCgaGCGCuGCGUGGa -3'
miRNA:   3'- cugCGCCcCCGCGa-CGCGcCGCACUa -5'
29422 5' -65.1 NC_006151.1 + 59358 0.7 0.246679
Target:  5'- cGCGCGcacGGGGCGCcGCGCGGcCGUc-- -3'
miRNA:   3'- cUGCGC---CCCCGCGaCGCGCC-GCAcua -5'
29422 5' -65.1 NC_006151.1 + 61764 0.7 0.264183
Target:  5'- -uCGCGGGGGcCGUggUGCuGCGGCGcGAg -3'
miRNA:   3'- cuGCGCCCCC-GCG--ACG-CGCCGCaCUa -5'
29422 5' -65.1 NC_006151.1 + 62094 0.66 0.457865
Target:  5'- cGGCGCGGucGGC-CUggGCGCGGcCGUGGUc -3'
miRNA:   3'- -CUGCGCCc-CCGcGA--CGCGCC-GCACUA- -5'
29422 5' -65.1 NC_006151.1 + 63512 0.7 0.276403
Target:  5'- --gGUGGGGGCGC-GCGgGGCGgucgGGg -3'
miRNA:   3'- cugCGCCCCCGCGaCGCgCCGCa---CUa -5'
29422 5' -65.1 NC_006151.1 + 64769 0.71 0.241061
Target:  5'- uGCGCGGGGGCugGUUGcCGgGGCGcGAg -3'
miRNA:   3'- cUGCGCCCCCG--CGAC-GCgCCGCaCUa -5'
29422 5' -65.1 NC_006151.1 + 64863 0.67 0.390413
Target:  5'- --gGCGGaGGGcCGCUGCcCGGCGgGAg -3'
miRNA:   3'- cugCGCC-CCC-GCGACGcGCCGCaCUa -5'
29422 5' -65.1 NC_006151.1 + 66537 0.7 0.252404
Target:  5'- cGCGCucuucGGGGGCGC-GCGCGGCcgcgccgccGUGGa -3'
miRNA:   3'- cUGCG-----CCCCCGCGaCGCGCCG---------CACUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.