miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29422 5' -65.1 NC_006151.1 + 734 0.66 0.475686
Target:  5'- --gGCGGGGGCuuccGCUcCGCGGCGc--- -3'
miRNA:   3'- cugCGCCCCCG----CGAcGCGCCGCacua -5'
29422 5' -65.1 NC_006151.1 + 3118 0.66 0.475686
Target:  5'- cGGCGCGGGucccaggccgGGCGCgggGCGCccucGGCGg--- -3'
miRNA:   3'- -CUGCGCCC----------CCGCGa--CGCG----CCGCacua -5'
29422 5' -65.1 NC_006151.1 + 3245 0.69 0.302191
Target:  5'- cGGCGCGgcggcggagcGGGGCGCcgcggcGCGCGGCGa--- -3'
miRNA:   3'- -CUGCGC----------CCCCGCGa-----CGCGCCGCacua -5'
29422 5' -65.1 NC_006151.1 + 4314 0.71 0.241061
Target:  5'- -uCGCGGGGcacgcggccGgGCUGCGCGGCGgcGAa -3'
miRNA:   3'- cuGCGCCCC---------CgCGACGCGCCGCa-CUa -5'
29422 5' -65.1 NC_006151.1 + 4393 0.76 0.103098
Target:  5'- cGGCGCGGGGGUccGCgGCGCGGCccgGGUa -3'
miRNA:   3'- -CUGCGCCCCCG--CGaCGCGCCGca-CUA- -5'
29422 5' -65.1 NC_006151.1 + 5083 0.66 0.466732
Target:  5'- -cCGCGGGGcCGCggcggGCGCcGGCG-GAg -3'
miRNA:   3'- cuGCGCCCCcGCGa----CGCG-CCGCaCUa -5'
29422 5' -65.1 NC_006151.1 + 5343 0.68 0.374592
Target:  5'- --gGCGGaGGGCGCccucuccgGCGCGGCGc--- -3'
miRNA:   3'- cugCGCC-CCCGCGa-------CGCGCCGCacua -5'
29422 5' -65.1 NC_006151.1 + 8078 0.69 0.295574
Target:  5'- --gGCGacGGGGCGUgGCGgGGCGUGGc -3'
miRNA:   3'- cugCGC--CCCCGCGaCGCgCCGCACUa -5'
29422 5' -65.1 NC_006151.1 + 10202 0.69 0.289071
Target:  5'- cGGCGCGGGcGGCgGCUGCagagGCGGCugcgGAc -3'
miRNA:   3'- -CUGCGCCC-CCG-CGACG----CGCCGca--CUa -5'
29422 5' -65.1 NC_006151.1 + 11698 0.7 0.276403
Target:  5'- -cCGCGGGacGGCGC-GUGCGGCGcgGAa -3'
miRNA:   3'- cuGCGCCC--CCGCGaCGCGCCGCa-CUa -5'
29422 5' -65.1 NC_006151.1 + 11790 0.67 0.398486
Target:  5'- gGGCGCGuGGGCGagagGgGCGGgGUGGg -3'
miRNA:   3'- -CUGCGCcCCCGCga--CgCGCCgCACUa -5'
29422 5' -65.1 NC_006151.1 + 15052 0.67 0.390413
Target:  5'- cGCGCGGGgccccGGCGCcuucUGCGCGGCc---- -3'
miRNA:   3'- cUGCGCCC-----CCGCG----ACGCGCCGcacua -5'
29422 5' -65.1 NC_006151.1 + 17109 0.67 0.423335
Target:  5'- gGGCGcCGGGGGCuccggcggcgguGCUGCGggaGGCGgccagGAg -3'
miRNA:   3'- -CUGC-GCCCCCG------------CGACGCg--CCGCa----CUa -5'
29422 5' -65.1 NC_006151.1 + 17395 0.66 0.475686
Target:  5'- cACGaCGGGGcGCGUggcGCGCGGCa---- -3'
miRNA:   3'- cUGC-GCCCC-CGCGa--CGCGCCGcacua -5'
29422 5' -65.1 NC_006151.1 + 18696 0.68 0.35921
Target:  5'- cGCGCGGGcGGCGCcgGCGU--CGUGAc -3'
miRNA:   3'- cUGCGCCC-CCGCGa-CGCGccGCACUa -5'
29422 5' -65.1 NC_006151.1 + 19058 0.68 0.366845
Target:  5'- gGGCGCaGGcacucGGGCGC-GCGCGG-GUGGUa -3'
miRNA:   3'- -CUGCG-CC-----CCCGCGaCGCGCCgCACUA- -5'
29422 5' -65.1 NC_006151.1 + 19123 0.74 0.133637
Target:  5'- -cCGCGGGGGCGC-GCGCGcguaguaccaguccaGCGUGGc -3'
miRNA:   3'- cuGCGCCCCCGCGaCGCGC---------------CGCACUa -5'
29422 5' -65.1 NC_006151.1 + 19967 0.68 0.362251
Target:  5'- -uCGCGGGGGUGCccagguuuaaaacgGCGCGGaCG-GAg -3'
miRNA:   3'- cuGCGCCCCCGCGa-------------CGCGCC-GCaCUa -5'
29422 5' -65.1 NC_006151.1 + 20485 0.74 0.144599
Target:  5'- gGGCGCGGGGGUcgucggcggcucugGCUcgaucggGgGCGGCGUGGUg -3'
miRNA:   3'- -CUGCGCCCCCG--------------CGA-------CgCGCCGCACUA- -5'
29422 5' -65.1 NC_006151.1 + 20625 0.71 0.241061
Target:  5'- gGugGUGGGGGCGCccccUGgGCGGCa---- -3'
miRNA:   3'- -CugCGCCCCCGCG----ACgCGCCGcacua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.