miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29422 5' -65.1 NC_006151.1 + 100422 1.05 0.000679
Target:  5'- cGACGCGGGGGCGCUGCGCGGCGUGAUg -3'
miRNA:   3'- -CUGCGCCCCCGCGACGCGCCGCACUA- -5'
29422 5' -65.1 NC_006151.1 + 102686 0.8 0.049096
Target:  5'- gGACGCGGGGGCGCccgGCGCgGGCGg--- -3'
miRNA:   3'- -CUGCGCCCCCGCGa--CGCG-CCGCacua -5'
29422 5' -65.1 NC_006151.1 + 137115 0.79 0.058834
Target:  5'- gGACGCcuGGGGGCGCgcgacgGCGCGGCGcGAc -3'
miRNA:   3'- -CUGCG--CCCCCGCGa-----CGCGCCGCaCUa -5'
29422 5' -65.1 NC_006151.1 + 113028 0.79 0.065213
Target:  5'- cGACGCGugcgccGGGUGCUGCGCGGCGgcgGAg -3'
miRNA:   3'- -CUGCGCc-----CCCGCGACGCGCCGCa--CUa -5'
29422 5' -65.1 NC_006151.1 + 103687 0.77 0.088597
Target:  5'- --gGCGGGGGUGCUGCGCGccgcCGUGGa -3'
miRNA:   3'- cugCGCCCCCGCGACGCGCc---GCACUa -5'
29422 5' -65.1 NC_006151.1 + 4393 0.76 0.103098
Target:  5'- cGGCGCGGGGGUccGCgGCGCGGCccgGGUa -3'
miRNA:   3'- -CUGCGCCCCCG--CGaCGCGCCGca-CUA- -5'
29422 5' -65.1 NC_006151.1 + 118783 0.76 0.105722
Target:  5'- gGACGCGGuGGCGCgcgGCGCGGCGc--- -3'
miRNA:   3'- -CUGCGCCcCCGCGa--CGCGCCGCacua -5'
29422 5' -65.1 NC_006151.1 + 19123 0.74 0.133637
Target:  5'- -cCGCGGGGGCGC-GCGCGcguaguaccaguccaGCGUGGc -3'
miRNA:   3'- cuGCGCCCCCGCGaCGCGC---------------CGCACUa -5'
29422 5' -65.1 NC_006151.1 + 20485 0.74 0.144599
Target:  5'- gGGCGCGGGGGUcgucggcggcucugGCUcgaucggGgGCGGCGUGGUg -3'
miRNA:   3'- -CUGCGCCCCCG--------------CGA-------CgCGCCGCACUA- -5'
29422 5' -65.1 NC_006151.1 + 69973 0.72 0.186095
Target:  5'- -cCGCGcGGGCGCUGCaGCGGCGg--- -3'
miRNA:   3'- cuGCGCcCCCGCGACG-CGCCGCacua -5'
29422 5' -65.1 NC_006151.1 + 74513 0.72 0.190596
Target:  5'- --aGCGGGGGCaGCaGCGUGGCGUc-- -3'
miRNA:   3'- cugCGCCCCCG-CGaCGCGCCGCAcua -5'
29422 5' -65.1 NC_006151.1 + 130932 0.72 0.195193
Target:  5'- -cCGCGGGGGCGg-GgGCGGCGgggGGUc -3'
miRNA:   3'- cuGCGCCCCCGCgaCgCGCCGCa--CUA- -5'
29422 5' -65.1 NC_006151.1 + 100454 0.72 0.209568
Target:  5'- aGACGaCGGaGGCGCUGCGCGaGUGcGAg -3'
miRNA:   3'- -CUGC-GCCcCCGCGACGCGC-CGCaCUa -5'
29422 5' -65.1 NC_006151.1 + 75392 0.71 0.216584
Target:  5'- cGGCGCGGGgcgGGUGCgUGCGCggguccgggaggcccGGCGUGGg -3'
miRNA:   3'- -CUGCGCCC---CCGCG-ACGCG---------------CCGCACUa -5'
29422 5' -65.1 NC_006151.1 + 134004 0.71 0.219138
Target:  5'- aGCGCGGGGGCcaccagcGCgcagaGCGCGGCGa--- -3'
miRNA:   3'- cUGCGCCCCCG-------CGa----CGCGCCGCacua -5'
29422 5' -65.1 NC_006151.1 + 23016 0.71 0.224847
Target:  5'- gGGCGCGGGGGUGgUGgagGCGGCGa--- -3'
miRNA:   3'- -CUGCGCCCCCGCgACg--CGCCGCacua -5'
29422 5' -65.1 NC_006151.1 + 127805 0.71 0.228546
Target:  5'- cGCGCGGGGGCGCgagguccuUGCgguucacguacgugGCGGCGUc-- -3'
miRNA:   3'- cUGCGCCCCCGCG--------ACG--------------CGCCGCAcua -5'
29422 5' -65.1 NC_006151.1 + 139646 0.71 0.230147
Target:  5'- cGGCGCGGGGGuCGCgGCG-GGCGc--- -3'
miRNA:   3'- -CUGCGCCCCC-GCGaCGCgCCGCacua -5'
29422 5' -65.1 NC_006151.1 + 4314 0.71 0.241061
Target:  5'- -uCGCGGGGcacgcggccGgGCUGCGCGGCGgcGAa -3'
miRNA:   3'- cuGCGCCCC---------CgCGACGCGCCGCa-CUa -5'
29422 5' -65.1 NC_006151.1 + 64769 0.71 0.241061
Target:  5'- uGCGCGGGGGCugGUUGcCGgGGCGcGAg -3'
miRNA:   3'- cUGCGCCCCCG--CGAC-GCgCCGCaCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.