miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29423 3' -56.5 NC_006151.1 + 98871 1.09 0.002447
Target:  5'- gCGCGCUCUUUGCCCUCACGAUCGCCGa -3'
miRNA:   3'- -GCGCGAGAAACGGGAGUGCUAGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 101621 0.76 0.369822
Target:  5'- uCGUGUUCUUccUGCCC-CACGAccaguUCGCCGc -3'
miRNA:   3'- -GCGCGAGAA--ACGGGaGUGCU-----AGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 70649 0.74 0.474796
Target:  5'- gCGCGCgaggCgcccGUCCUCACGcgCGCCGc -3'
miRNA:   3'- -GCGCGa---Gaaa-CGGGAGUGCuaGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 64790 0.73 0.503319
Target:  5'- gGCGCgagCUggccacGCCCUCGCGGaaGCCGg -3'
miRNA:   3'- gCGCGa--GAaa----CGGGAGUGCUagCGGC- -5'
29423 3' -56.5 NC_006151.1 + 97171 0.73 0.512993
Target:  5'- aGCGCUCg--GCCCggcgCACGAcgCGCuCGa -3'
miRNA:   3'- gCGCGAGaaaCGGGa---GUGCUa-GCG-GC- -5'
29423 3' -56.5 NC_006151.1 + 89044 0.72 0.572439
Target:  5'- uGCGCUUgc-GCCCgugCGCGGUgGCCu -3'
miRNA:   3'- gCGCGAGaaaCGGGa--GUGCUAgCGGc -5'
29423 3' -56.5 NC_006151.1 + 66506 0.72 0.592654
Target:  5'- gCGCGCggaUCUUcGCCgggCUCGCGcgCGCCGc -3'
miRNA:   3'- -GCGCG---AGAAaCGG---GAGUGCuaGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 59345 0.71 0.623172
Target:  5'- gCGCGCUCaggGCCgCgcgCACGGggCGCCGc -3'
miRNA:   3'- -GCGCGAGaaaCGG-Ga--GUGCUa-GCGGC- -5'
29423 3' -56.5 NC_006151.1 + 72797 0.71 0.633368
Target:  5'- gCGCGCaCgg-GUCCUCgACGAgcUCGCCGg -3'
miRNA:   3'- -GCGCGaGaaaCGGGAG-UGCU--AGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 142946 0.71 0.643563
Target:  5'- aCGCGCgccc-GCCCUCGCccAUCGCCa -3'
miRNA:   3'- -GCGCGagaaaCGGGAGUGc-UAGCGGc -5'
29423 3' -56.5 NC_006151.1 + 22581 0.71 0.643563
Target:  5'- cCGgGCcCgg-GCCCUgAUGAUCGCCa -3'
miRNA:   3'- -GCgCGaGaaaCGGGAgUGCUAGCGGc -5'
29423 3' -56.5 NC_006151.1 + 75559 0.7 0.674062
Target:  5'- aCGCGCuUCUcgagGgCCUCgaggaacaccagGCGGUCGCCGa -3'
miRNA:   3'- -GCGCG-AGAaa--CgGGAG------------UGCUAGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 135930 0.7 0.694239
Target:  5'- gCGCGCUCUgccgcggggaGcCCCUCGCGG-CGCgGg -3'
miRNA:   3'- -GCGCGAGAaa--------C-GGGAGUGCUaGCGgC- -5'
29423 3' -56.5 NC_006151.1 + 48858 0.69 0.71421
Target:  5'- gCGCGCUgCUggaGCCCga--GAUCGCCa -3'
miRNA:   3'- -GCGCGA-GAaa-CGGGagugCUAGCGGc -5'
29423 3' -56.5 NC_006151.1 + 132768 0.69 0.733902
Target:  5'- aGCGC-Cgg-GCCCUCGuCGAagGCCa -3'
miRNA:   3'- gCGCGaGaaaCGGGAGU-GCUagCGGc -5'
29423 3' -56.5 NC_006151.1 + 37744 0.69 0.743622
Target:  5'- -cCGCUCUggGCCCUgccgcaCGCGGUgagCGCCGu -3'
miRNA:   3'- gcGCGAGAaaCGGGA------GUGCUA---GCGGC- -5'
29423 3' -56.5 NC_006151.1 + 85607 0.69 0.743622
Target:  5'- gCGCGCUCg-UGCCCaaCGCGc-CGCCGc -3'
miRNA:   3'- -GCGCGAGaaACGGGa-GUGCuaGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 39079 0.69 0.743622
Target:  5'- gGUGCUCUacgacccgcUGCCC-CACGAggagcucugCGCCGa -3'
miRNA:   3'- gCGCGAGAa--------ACGGGaGUGCUa--------GCGGC- -5'
29423 3' -56.5 NC_006151.1 + 106806 0.69 0.743622
Target:  5'- gGUGCUCgucgggGCCC-CGCugguGAUCGCCa -3'
miRNA:   3'- gCGCGAGaaa---CGGGaGUG----CUAGCGGc -5'
29423 3' -56.5 NC_006151.1 + 91001 0.69 0.751328
Target:  5'- gCGCGCUCcagcacggcgGuCCCgUCGCGGUCGCgCGc -3'
miRNA:   3'- -GCGCGAGaaa-------C-GGG-AGUGCUAGCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.