miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29423 3' -56.5 NC_006151.1 + 3464 0.69 0.753244
Target:  5'- gGUGCUCgggcauggGCCCgaGCGggCGCCGg -3'
miRNA:   3'- gCGCGAGaaa-----CGGGagUGCuaGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 4364 0.66 0.880063
Target:  5'- gGCGCagag-GgCCUCgACGGUCGCCu -3'
miRNA:   3'- gCGCGagaaaCgGGAG-UGCUAGCGGc -5'
29423 3' -56.5 NC_006151.1 + 7656 0.66 0.89372
Target:  5'- uCGCGCUCggcgcGCgCUC-CGAgggCGCCc -3'
miRNA:   3'- -GCGCGAGaaa--CGgGAGuGCUa--GCGGc -5'
29423 3' -56.5 NC_006151.1 + 11905 0.66 0.865531
Target:  5'- gCGCGUcgggguuuUCgc-GCCCUCGCGc-CGCCGc -3'
miRNA:   3'- -GCGCG--------AGaaaCGGGAGUGCuaGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 22581 0.71 0.643563
Target:  5'- cCGgGCcCgg-GCCCUgAUGAUCGCCa -3'
miRNA:   3'- -GCgCGaGaaaCGGGAgUGCUAGCGGc -5'
29423 3' -56.5 NC_006151.1 + 25415 0.66 0.887003
Target:  5'- gGCGC-CgccGCCC-CACGcgCGCCc -3'
miRNA:   3'- gCGCGaGaaaCGGGaGUGCuaGCGGc -5'
29423 3' -56.5 NC_006151.1 + 28136 0.66 0.89372
Target:  5'- gCGCGCUCcgcGCCuCUCcCGGUCGauccCCGu -3'
miRNA:   3'- -GCGCGAGaaaCGG-GAGuGCUAGC----GGC- -5'
29423 3' -56.5 NC_006151.1 + 30920 0.66 0.887003
Target:  5'- cCGCGggCg--GCCCgCGCGgAUCGCCc -3'
miRNA:   3'- -GCGCgaGaaaCGGGaGUGC-UAGCGGc -5'
29423 3' -56.5 NC_006151.1 + 31153 0.67 0.826505
Target:  5'- gGCGCUCUcucugggucgcagcGCCCUaaacuuggCACGGUCcGCCGc -3'
miRNA:   3'- gCGCGAGAaa------------CGGGA--------GUGCUAG-CGGC- -5'
29423 3' -56.5 NC_006151.1 + 37744 0.69 0.743622
Target:  5'- -cCGCUCUggGCCCUgccgcaCGCGGUgagCGCCGu -3'
miRNA:   3'- gcGCGAGAaaCGGGA------GUGCUA---GCGGC- -5'
29423 3' -56.5 NC_006151.1 + 38962 0.68 0.774959
Target:  5'- gGCGCUCaccuucgacccggccGCCCUgGCGcacAUCGCCGc -3'
miRNA:   3'- gCGCGAGaaa------------CGGGAgUGC---UAGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 39079 0.69 0.743622
Target:  5'- gGUGCUCUacgacccgcUGCCC-CACGAggagcucugCGCCGa -3'
miRNA:   3'- gCGCGAGAa--------ACGGGaGUGCUa--------GCGGC- -5'
29423 3' -56.5 NC_006151.1 + 48858 0.69 0.71421
Target:  5'- gCGCGCUgCUggaGCCCga--GAUCGCCa -3'
miRNA:   3'- -GCGCGA-GAaa-CGGGagugCUAGCGGc -5'
29423 3' -56.5 NC_006151.1 + 50013 0.67 0.850165
Target:  5'- cCGCGCgcgCg--GCCCgCGCGG-CGCCc -3'
miRNA:   3'- -GCGCGa--GaaaCGGGaGUGCUaGCGGc -5'
29423 3' -56.5 NC_006151.1 + 53017 0.66 0.89372
Target:  5'- gGCGCguccaGCCCUgCAgGuUCGCCGg -3'
miRNA:   3'- gCGCGagaaaCGGGA-GUgCuAGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 53115 0.68 0.80844
Target:  5'- cCGUaCUCgagcGCCUUCAUGAgcUCGCCGa -3'
miRNA:   3'- -GCGcGAGaaa-CGGGAGUGCU--AGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 57116 0.67 0.825661
Target:  5'- gCGCGC-CgccgcGCCCg-GCGGUCGCCc -3'
miRNA:   3'- -GCGCGaGaaa--CGGGagUGCUAGCGGc -5'
29423 3' -56.5 NC_006151.1 + 57731 0.67 0.834014
Target:  5'- cCGCGCgc---GCCCgCACGGcgCGCCGc -3'
miRNA:   3'- -GCGCGagaaaCGGGaGUGCUa-GCGGC- -5'
29423 3' -56.5 NC_006151.1 + 58722 0.66 0.887003
Target:  5'- aGCGCcCccgUGCCgCUCGCGucgcgcagCGCCGc -3'
miRNA:   3'- gCGCGaGaa-ACGG-GAGUGCua------GCGGC- -5'
29423 3' -56.5 NC_006151.1 + 59345 0.71 0.623172
Target:  5'- gCGCGCUCaggGCCgCgcgCACGGggCGCCGc -3'
miRNA:   3'- -GCGCGAGaaaCGG-Ga--GUGCUa-GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.