miRNA display CGI


Results 21 - 40 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29423 5' -58.9 NC_006151.1 + 10627 0.68 0.642184
Target:  5'- -cCCGCGugCGCUc-GugCCGGCGCg -3'
miRNA:   3'- aaGGUGCugGCGGucUugGGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 11328 0.66 0.788402
Target:  5'- -aCCGCGcgggcgauACCGCgCGGGccGCCCGcggGCGCUa -3'
miRNA:   3'- aaGGUGC--------UGGCG-GUCU--UGGGC---UGCGA- -5'
29423 5' -58.9 NC_006151.1 + 13182 0.74 0.324425
Target:  5'- -gCCGCGGCCGUCucGGGGCCCGcgGCGCc -3'
miRNA:   3'- aaGGUGCUGGCGG--UCUUGGGC--UGCGa -5'
29423 5' -58.9 NC_006151.1 + 14220 0.69 0.611818
Target:  5'- -aCgACGAUCG-CGGGACCCGACGgUa -3'
miRNA:   3'- aaGgUGCUGGCgGUCUUGGGCUGCgA- -5'
29423 5' -58.9 NC_006151.1 + 15044 0.78 0.197499
Target:  5'- gUCCACGGCgCGCgGGGcCCCGGCGCc -3'
miRNA:   3'- aAGGUGCUG-GCGgUCUuGGGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 15884 0.68 0.672479
Target:  5'- -gCCGC--CCGCCGGGGgacgcgcgcCCCGACGCg -3'
miRNA:   3'- aaGGUGcuGGCGGUCUU---------GGGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 16904 0.7 0.551671
Target:  5'- -gCCGCGcCCGCCccGGCgCCGGCGCa -3'
miRNA:   3'- aaGGUGCuGGCGGucUUG-GGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 18550 0.68 0.642184
Target:  5'- -cCCggaACGGCCGCgAGGccGCCCGGCGg- -3'
miRNA:   3'- aaGG---UGCUGGCGgUCU--UGGGCUGCga -5'
29423 5' -58.9 NC_006151.1 + 18686 0.68 0.63206
Target:  5'- gUUCCACGGgCGCgCGGGcgGCgCCGGCGUc -3'
miRNA:   3'- -AAGGUGCUgGCG-GUCU--UG-GGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 18743 0.67 0.702484
Target:  5'- -gUCGCcGCCGCCGGGGCCCcACGg- -3'
miRNA:   3'- aaGGUGcUGGCGGUCUUGGGcUGCga -5'
29423 5' -58.9 NC_006151.1 + 20145 0.67 0.729047
Target:  5'- -gCCGCgggggcggcgcgugGACCGCCGGGccgcGCCCGGguCGCg -3'
miRNA:   3'- aaGGUG--------------CUGGCGGUCU----UGGGCU--GCGa -5'
29423 5' -58.9 NC_006151.1 + 20554 0.67 0.711394
Target:  5'- gUCCACGACgcgcaggcugucgUGCCAcGAUCCGACGaCg -3'
miRNA:   3'- aAGGUGCUG-------------GCGGUcUUGGGCUGC-Ga -5'
29423 5' -58.9 NC_006151.1 + 20714 0.73 0.362408
Target:  5'- -cCCGCGuCCGgCGGGGCCgGGCGCg -3'
miRNA:   3'- aaGGUGCuGGCgGUCUUGGgCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 22809 0.69 0.561596
Target:  5'- cUCCcCGGCCGUCAGGugCagggGGCGCg -3'
miRNA:   3'- aAGGuGCUGGCGGUCUugGg---CUGCGa -5'
29423 5' -58.9 NC_006151.1 + 25449 0.69 0.57157
Target:  5'- -cCCGCGGCCGCCcgccccccCCUGGCGCc -3'
miRNA:   3'- aaGGUGCUGGCGGucuu----GGGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 27199 0.69 0.611818
Target:  5'- -gCCGCGcagaaGgCGCCGGGGCCCcGCGCg -3'
miRNA:   3'- aaGGUGC-----UgGCGGUCUUGGGcUGCGa -5'
29423 5' -58.9 NC_006151.1 + 27343 0.66 0.788402
Target:  5'- -cCCGgGACCggggucguggGCCGGGGCCCGG-GCg -3'
miRNA:   3'- aaGGUgCUGG----------CGGUCUUGGGCUgCGa -5'
29423 5' -58.9 NC_006151.1 + 28047 0.68 0.662402
Target:  5'- -cCCGCGAUCGUCGucgucgaggccGAugCCGACGUc -3'
miRNA:   3'- aaGGUGCUGGCGGU-----------CUugGGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 28817 0.68 0.621935
Target:  5'- gUCCGgGACCgGCCAaugcGGGCCCcgggGACGCg -3'
miRNA:   3'- aAGGUgCUGG-CGGU----CUUGGG----CUGCGa -5'
29423 5' -58.9 NC_006151.1 + 30919 0.66 0.779289
Target:  5'- -cCCGCGGgcggcCCGCgCGGAucGCCCG-CGCg -3'
miRNA:   3'- aaGGUGCU-----GGCG-GUCU--UGGGCuGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.