miRNA display CGI


Results 1 - 20 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29423 5' -58.9 NC_006151.1 + 2113 0.66 0.788402
Target:  5'- -gCCGCGgggccggccgucGCCGCCGcGGACgCCGACGa- -3'
miRNA:   3'- aaGGUGC------------UGGCGGU-CUUG-GGCUGCga -5'
29423 5' -58.9 NC_006151.1 + 2152 0.66 0.788402
Target:  5'- cUCCACaGAguccccguccUCGCCGGGGccggcCCCGGCGCc -3'
miRNA:   3'- aAGGUG-CU----------GGCGGUCUU-----GGGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 2616 0.72 0.429314
Target:  5'- --gCGgGACCGggguCCGGGGCCCGGCGCg -3'
miRNA:   3'- aagGUgCUGGC----GGUCUUGGGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 2772 0.69 0.608786
Target:  5'- --gCACGGCCGCgCGGAGCUCGcggcacccgggccaGCGCa -3'
miRNA:   3'- aagGUGCUGGCG-GUCUUGGGC--------------UGCGa -5'
29423 5' -58.9 NC_006151.1 + 3877 0.71 0.474642
Target:  5'- -cCCGCcGCCGCCGGcg-CCGGCGCUg -3'
miRNA:   3'- aaGGUGcUGGCGGUCuugGGCUGCGA- -5'
29423 5' -58.9 NC_006151.1 + 4280 0.66 0.751211
Target:  5'- -gCCGCGGCagGCCAGGACgCaGGCGUc -3'
miRNA:   3'- aaGGUGCUGg-CGGUCUUGgG-CUGCGa -5'
29423 5' -58.9 NC_006151.1 + 4512 0.67 0.722211
Target:  5'- -aCCGCGugCGgCAGGGCCCaGA-GCg -3'
miRNA:   3'- aaGGUGCugGCgGUCUUGGG-CUgCGa -5'
29423 5' -58.9 NC_006151.1 + 4538 0.67 0.712381
Target:  5'- gUCCugGGCgGCCAuGGcgucCCCGAUGUg -3'
miRNA:   3'- aAGGugCUGgCGGU-CUu---GGGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 4604 0.7 0.531009
Target:  5'- -gCCGUGGCCGUgGGGcgcguggACCCGGCGCUg -3'
miRNA:   3'- aaGGUGCUGGCGgUCU-------UGGGCUGCGA- -5'
29423 5' -58.9 NC_006151.1 + 5090 0.72 0.411049
Target:  5'- -gCCGCGGCgggCGCCGGcggagacgguggcGGCCCGGCGCg -3'
miRNA:   3'- aaGGUGCUG---GCGGUC-------------UUGGGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 5332 0.7 0.502959
Target:  5'- -gCCGCGGCCGCggCGGAGggcgcccucUCCGGCGCg -3'
miRNA:   3'- aaGGUGCUGGCG--GUCUU---------GGGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 5629 0.7 0.512562
Target:  5'- -gCCGCcGCCGCCGGGcgccgagaccgGCCCGGCGg- -3'
miRNA:   3'- aaGGUGcUGGCGGUCU-----------UGGGCUGCga -5'
29423 5' -58.9 NC_006151.1 + 5872 0.69 0.591636
Target:  5'- -cCCGgGGCCGCCGGGGgcCCCGGC-CUc -3'
miRNA:   3'- aaGGUgCUGGCGGUCUU--GGGCUGcGA- -5'
29423 5' -58.9 NC_006151.1 + 5915 0.66 0.779289
Target:  5'- -gCCGggguCGGCgGCCGGGGCCCGGaGCc -3'
miRNA:   3'- aaGGU----GCUGgCGGUCUUGGGCUgCGa -5'
29423 5' -58.9 NC_006151.1 + 6064 0.67 0.692529
Target:  5'- -aCCACGAucUCGCCcGAGcCCCGGCGg- -3'
miRNA:   3'- aaGGUGCU--GGCGGuCUU-GGGCUGCga -5'
29423 5' -58.9 NC_006151.1 + 6142 0.66 0.770047
Target:  5'- -gCCGCGGCCGCgAGGacggcggccucgGCCuCGGCGg- -3'
miRNA:   3'- aaGGUGCUGGCGgUCU------------UGG-GCUGCga -5'
29423 5' -58.9 NC_006151.1 + 6247 0.72 0.429314
Target:  5'- -cCCugGcugccGCCGUCGGGGCCgGACGCg -3'
miRNA:   3'- aaGGugC-----UGGCGGUCUUGGgCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 6298 0.68 0.621935
Target:  5'- -gCgGCGGCCGCCAGGAgCUGGCu-- -3'
miRNA:   3'- aaGgUGCUGGCGGUCUUgGGCUGcga -5'
29423 5' -58.9 NC_006151.1 + 8305 0.68 0.672479
Target:  5'- -gCCGCGucCCGCCccGAGCCCccggGGCGCg -3'
miRNA:   3'- aaGGUGCu-GGCGGu-CUUGGG----CUGCGa -5'
29423 5' -58.9 NC_006151.1 + 9033 0.67 0.731966
Target:  5'- cUCC-CGcCCGCCGGGgcGCCCcGCGUg -3'
miRNA:   3'- aAGGuGCuGGCGGUCU--UGGGcUGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.