miRNA display CGI


Results 1 - 20 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29423 5' -58.9 NC_006151.1 + 98905 1.05 0.002474
Target:  5'- cUUCCACGACCGCCAGAACCCGACGCUg -3'
miRNA:   3'- -AAGGUGCUGGCGGUCUUGGGCUGCGA- -5'
29423 5' -58.9 NC_006151.1 + 125221 0.85 0.066904
Target:  5'- -cCCGCGGCCGCCcgucGGGCCCGGCGCUc -3'
miRNA:   3'- aaGGUGCUGGCGGu---CUUGGGCUGCGA- -5'
29423 5' -58.9 NC_006151.1 + 66560 0.82 0.101981
Target:  5'- -gCCGCG-CCGCCGuGGACCCGGCGCUc -3'
miRNA:   3'- aaGGUGCuGGCGGU-CUUGGGCUGCGA- -5'
29423 5' -58.9 NC_006151.1 + 99876 0.81 0.113153
Target:  5'- cUCCuACGACCGCCGcgcGGACCUGGCGCa -3'
miRNA:   3'- aAGG-UGCUGGCGGU---CUUGGGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 39914 0.81 0.125462
Target:  5'- -gCCGCgGGCUGCUGGAGCCCGACGCc -3'
miRNA:   3'- aaGGUG-CUGGCGGUCUUGGGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 69752 0.8 0.128728
Target:  5'- -gCCGCGACCGCCGGGGCCaCGcgccGCGCg -3'
miRNA:   3'- aaGGUGCUGGCGGUCUUGG-GC----UGCGa -5'
29423 5' -58.9 NC_006151.1 + 79774 0.79 0.150022
Target:  5'- gUCCACGGCgGCCGGAucgcgGCCuCGGCGCg -3'
miRNA:   3'- aAGGUGCUGgCGGUCU-----UGG-GCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 39434 0.79 0.153869
Target:  5'- gUCCGCGuCCGCCuGGACCCGGcCGCc -3'
miRNA:   3'- aAGGUGCuGGCGGuCUUGGGCU-GCGa -5'
29423 5' -58.9 NC_006151.1 + 15044 0.78 0.197499
Target:  5'- gUCCACGGCgCGCgGGGcCCCGGCGCc -3'
miRNA:   3'- aAGGUGCUG-GCGgUCUuGGGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 58761 0.77 0.217789
Target:  5'- -aCCGCGGCCGCC-GAGCCCGuccacgGCGCc -3'
miRNA:   3'- aaGGUGCUGGCGGuCUUGGGC------UGCGa -5'
29423 5' -58.9 NC_006151.1 + 77617 0.76 0.239834
Target:  5'- cUCUGCGGCCGCgCGGAGCUgGACGUg -3'
miRNA:   3'- aAGGUGCUGGCG-GUCUUGGgCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 49937 0.76 0.257568
Target:  5'- --aCACGAuCCGCCGGGACCUGGcCGCg -3'
miRNA:   3'- aagGUGCU-GGCGGUCUUGGGCU-GCGa -5'
29423 5' -58.9 NC_006151.1 + 68658 0.75 0.276359
Target:  5'- -gCCACGGCCGgCGGGGCCCG-CGUc -3'
miRNA:   3'- aaGGUGCUGGCgGUCUUGGGCuGCGa -5'
29423 5' -58.9 NC_006151.1 + 85455 0.74 0.309379
Target:  5'- cUUCCugGGCCgcgGCCAGAACCUcuuccucggcgagGACGCg -3'
miRNA:   3'- -AAGGugCUGG---CGGUCUUGGG-------------CUGCGa -5'
29423 5' -58.9 NC_006151.1 + 56225 0.74 0.317193
Target:  5'- -cCCugGugCGCCccgAGGACCCGACGg- -3'
miRNA:   3'- aaGGugCugGCGG---UCUUGGGCUGCga -5'
29423 5' -58.9 NC_006151.1 + 88401 0.74 0.324425
Target:  5'- gUCCGCGGCCGCgAG-GCCCGggacguccGCGCg -3'
miRNA:   3'- aAGGUGCUGGCGgUCuUGGGC--------UGCGa -5'
29423 5' -58.9 NC_006151.1 + 13182 0.74 0.324425
Target:  5'- -gCCGCGGCCGUCucGGGGCCCGcgGCGCc -3'
miRNA:   3'- aaGGUGCUGGCGG--UCUUGGGC--UGCGa -5'
29423 5' -58.9 NC_006151.1 + 87953 0.74 0.339254
Target:  5'- --gCACGAUgGCCAGGAuCCCGAUGCc -3'
miRNA:   3'- aagGUGCUGgCGGUCUU-GGGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 49107 0.74 0.346851
Target:  5'- cUUCGCGGCgGuCCGGGcgacguACCCGACGCUg -3'
miRNA:   3'- aAGGUGCUGgC-GGUCU------UGGGCUGCGA- -5'
29423 5' -58.9 NC_006151.1 + 129109 0.74 0.346851
Target:  5'- --gCACGAgCGCCAGGGCCgaGGCGCg -3'
miRNA:   3'- aagGUGCUgGCGGUCUUGGg-CUGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.