miRNA display CGI


Results 1 - 20 of 395 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29424 3' -65.8 NC_006151.1 + 98700 1.07 0.000545
Target:  5'- gUGCCCCCGGAGCAGACGGCGCGCGCGc -3'
miRNA:   3'- -ACGGGGGCCUCGUCUGCCGCGCGCGC- -5'
29424 3' -65.8 NC_006151.1 + 52376 0.86 0.019457
Target:  5'- cGCCCCCGGGGCccgcggGGGCGGCGgGCGCc -3'
miRNA:   3'- aCGGGGGCCUCG------UCUGCCGCgCGCGc -5'
29424 3' -65.8 NC_006151.1 + 33210 0.84 0.027233
Target:  5'- cGCCCCCGGAGCAcGCGGgGCGCcccgGCGg -3'
miRNA:   3'- aCGGGGGCCUCGUcUGCCgCGCG----CGC- -5'
29424 3' -65.8 NC_006151.1 + 64492 0.84 0.028676
Target:  5'- cGCCCgCGGGcGCGGGCGGCGgGCGCGc -3'
miRNA:   3'- aCGGGgGCCU-CGUCUGCCGCgCGCGC- -5'
29424 3' -65.8 NC_006151.1 + 11686 0.84 0.029425
Target:  5'- cGCCCgaCGGGGCcgcgGGACGGCGCGUGCGg -3'
miRNA:   3'- aCGGGg-GCCUCG----UCUGCCGCGCGCGC- -5'
29424 3' -65.8 NC_006151.1 + 99543 0.82 0.036153
Target:  5'- cGCCCaCGGAGCAcgugggcGCGGCGCGCGCGg -3'
miRNA:   3'- aCGGGgGCCUCGUc------UGCCGCGCGCGC- -5'
29424 3' -65.8 NC_006151.1 + 19287 0.82 0.039047
Target:  5'- gGCCCaCCGGGGCcaGCGGCGCGgGCGg -3'
miRNA:   3'- aCGGG-GGCCUCGucUGCCGCGCgCGC- -5'
29424 3' -65.8 NC_006151.1 + 57213 0.82 0.041102
Target:  5'- gGCCCgcucgacgaggCCGucGCAGGCGGCGCGCGCGg -3'
miRNA:   3'- aCGGG-----------GGCcuCGUCUGCCGCGCGCGC- -5'
29424 3' -65.8 NC_006151.1 + 129339 0.81 0.046712
Target:  5'- cGgCCCCGGGGCGGcCGGCGCGC-CGa -3'
miRNA:   3'- aCgGGGGCCUCGUCuGCCGCGCGcGC- -5'
29424 3' -65.8 NC_006151.1 + 96865 0.81 0.049159
Target:  5'- cGCCCgCCGG-GC--GCGGCGCGCGCGg -3'
miRNA:   3'- aCGGG-GGCCuCGucUGCCGCGCGCGC- -5'
29424 3' -65.8 NC_006151.1 + 91558 0.8 0.050429
Target:  5'- gGCCagCGGGGCGauGGCGGCGCGCGCGu -3'
miRNA:   3'- aCGGggGCCUCGU--CUGCCGCGCGCGC- -5'
29424 3' -65.8 NC_006151.1 + 96674 0.8 0.055412
Target:  5'- cGUCCUCGGGGCAGGCGGCGUcgaggaaugcguccGCGCc -3'
miRNA:   3'- aCGGGGGCCUCGUCUGCCGCG--------------CGCGc -5'
29424 3' -65.8 NC_006151.1 + 19050 0.8 0.057274
Target:  5'- gGUCCaCCGGGcGCAGGCacucgGGCGCGCGCGg -3'
miRNA:   3'- aCGGG-GGCCU-CGUCUG-----CCGCGCGCGC- -5'
29424 3' -65.8 NC_006151.1 + 81817 0.79 0.060257
Target:  5'- aGCCCgCGGGGCAGcCGGCcCGCGCa -3'
miRNA:   3'- aCGGGgGCCUCGUCuGCCGcGCGCGc -5'
29424 3' -65.8 NC_006151.1 + 3674 0.79 0.068386
Target:  5'- cGUCCCCGGGGCGG-CGGgccccggGCGCGCGg -3'
miRNA:   3'- aCGGGGGCCUCGUCuGCCg------CGCGCGC- -5'
29424 3' -65.8 NC_006151.1 + 120221 0.78 0.069606
Target:  5'- aGCCCCCGGcGCGcGACcacgacggggaccuGGCGCGCGUGa -3'
miRNA:   3'- aCGGGGGCCuCGU-CUG--------------CCGCGCGCGC- -5'
29424 3' -65.8 NC_006151.1 + 102695 0.78 0.076406
Target:  5'- gGCgCCCGGcGCGGGCGGCGCggccgagccgaacacGCGCGa -3'
miRNA:   3'- aCGgGGGCCuCGUCUGCCGCG---------------CGCGC- -5'
29424 3' -65.8 NC_006151.1 + 51218 0.77 0.08156
Target:  5'- cGCCCgCGGGcccgcGCAGGCGGCGCGaGCGc -3'
miRNA:   3'- aCGGGgGCCU-----CGUCUGCCGCGCgCGC- -5'
29424 3' -65.8 NC_006151.1 + 33947 0.77 0.083421
Target:  5'- cGCCCCgggggcuCGGGGCGGgacGCGGCGCccGCGCGg -3'
miRNA:   3'- aCGGGG-------GCCUCGUC---UGCCGCG--CGCGC- -5'
29424 3' -65.8 NC_006151.1 + 98353 0.77 0.09242
Target:  5'- cGCCCgCGGGcgugcGCGGGCucugGGCGCGCGCGc -3'
miRNA:   3'- aCGGGgGCCU-----CGUCUG----CCGCGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.