miRNA display CGI


Results 1 - 20 of 395 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29424 3' -65.8 NC_006151.1 + 650 0.69 0.308161
Target:  5'- gGCUUCCGGGGCGcGGcCGGgGCGgGCu -3'
miRNA:   3'- aCGGGGGCCUCGU-CU-GCCgCGCgCGc -5'
29424 3' -65.8 NC_006151.1 + 2226 0.72 0.2103
Target:  5'- cGCCCCCGGc---GGCGGCGCGgaCGCu -3'
miRNA:   3'- aCGGGGGCCucguCUGCCGCGC--GCGc -5'
29424 3' -65.8 NC_006151.1 + 2292 0.69 0.301546
Target:  5'- cGCCCgCGGcGGC-GACGGCGCcCGgGg -3'
miRNA:   3'- aCGGGgGCC-UCGuCUGCCGCGcGCgC- -5'
29424 3' -65.8 NC_006151.1 + 2357 0.66 0.437204
Target:  5'- aGCgCCgCGGcGCAGAaGGCGCGCa-- -3'
miRNA:   3'- aCGgGG-GCCuCGUCUgCCGCGCGcgc -5'
29424 3' -65.8 NC_006151.1 + 2394 0.66 0.463018
Target:  5'- gGCCCUCGGGGCcgcGGAgcuCGGCGagGCcccgGCGg -3'
miRNA:   3'- aCGGGGGCCUCG---UCU---GCCGCg-CG----CGC- -5'
29424 3' -65.8 NC_006151.1 + 2468 0.71 0.225383
Target:  5'- aGCCCCC--AGCGGuuGGC-CGCGCGg -3'
miRNA:   3'- aCGGGGGccUCGUCugCCGcGCGCGC- -5'
29424 3' -65.8 NC_006151.1 + 2568 0.67 0.427948
Target:  5'- aGCCgUCCacgguggGGAGCAcgcgcuGGCGGUagGCGCGCGg -3'
miRNA:   3'- aCGG-GGG-------CCUCGU------CUGCCG--CGCGCGC- -5'
29424 3' -65.8 NC_006151.1 + 2695 0.7 0.246352
Target:  5'- gGCCCCgGGGuGCAGGCGG-GCGaaggaggccuccaCGCGg -3'
miRNA:   3'- aCGGGGgCCU-CGUCUGCCgCGC-------------GCGC- -5'
29424 3' -65.8 NC_006151.1 + 2748 0.68 0.342892
Target:  5'- gGCCCacgaUGGAGCuagaguccAGcACGGC-CGCGCGg -3'
miRNA:   3'- aCGGGg---GCCUCG--------UC-UGCCGcGCGCGC- -5'
29424 3' -65.8 NC_006151.1 + 3212 0.68 0.34073
Target:  5'- cGUCCUCGGggucGGCuaucugccgcauccAGGCGGCGCG-GCGg -3'
miRNA:   3'- aCGGGGGCC----UCG--------------UCUGCCGCGCgCGC- -5'
29424 3' -65.8 NC_006151.1 + 3674 0.79 0.068386
Target:  5'- cGUCCCCGGGGCGG-CGGgccccggGCGCGCGg -3'
miRNA:   3'- aCGGGGGCCUCGUCuGCCg------CGCGCGC- -5'
29424 3' -65.8 NC_006151.1 + 3925 0.7 0.282359
Target:  5'- gGCCagagCgGGGGCAGGCcgGGCGCGgGCu -3'
miRNA:   3'- aCGGg---GgCCUCGUCUG--CCGCGCgCGc -5'
29424 3' -65.8 NC_006151.1 + 4209 0.71 0.215228
Target:  5'- gGCCCgagggcggCCGGGGCgcGGGCgGGCGCGgGCa -3'
miRNA:   3'- aCGGG--------GGCCUCG--UCUG-CCGCGCgCGc -5'
29424 3' -65.8 NC_006151.1 + 4311 0.7 0.246911
Target:  5'- aGCUCgCGGGGCAcGCGGCcggGCuGCGCGg -3'
miRNA:   3'- aCGGGgGCCUCGUcUGCCG---CG-CGCGC- -5'
29424 3' -65.8 NC_006151.1 + 4385 0.67 0.428785
Target:  5'- cGCcuCCCCGGcGCGGggguccGCGGCGCG-GCc -3'
miRNA:   3'- aCG--GGGGCCuCGUC------UGCCGCGCgCGc -5'
29424 3' -65.8 NC_006151.1 + 5080 0.67 0.39609
Target:  5'- gGgCCgCGGGGCc-GCGGCGgGCGCc -3'
miRNA:   3'- aCgGGgGCCUCGucUGCCGCgCGCGc -5'
29424 3' -65.8 NC_006151.1 + 5260 0.68 0.350168
Target:  5'- gGCCCggGGGGCGGAgGGCGaGCGgGc -3'
miRNA:   3'- aCGGGggCCUCGUCUgCCGCgCGCgC- -5'
29424 3' -65.8 NC_006151.1 + 5331 0.66 0.471799
Target:  5'- aGCCgcggCCGcGGCGGAgGGCGCccucuccgGCGCGg -3'
miRNA:   3'- aCGGg---GGCcUCGUCUgCCGCG--------CGCGC- -5'
29424 3' -65.8 NC_006151.1 + 7019 0.67 0.415515
Target:  5'- gGCCCCCGcGGCGGcCaucucggcucgcccgGGCcaauggGCGCGCGg -3'
miRNA:   3'- aCGGGGGCcUCGUCuG---------------CCG------CGCGCGC- -5'
29424 3' -65.8 NC_006151.1 + 8321 0.73 0.166178
Target:  5'- aGCCCCCGGGGCGcGCGGgccucgauCGCGCcCGc -3'
miRNA:   3'- aCGGGGGCCUCGUcUGCC--------GCGCGcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.