miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29424 5' -54 NC_006151.1 + 63887 0.69 0.863991
Target:  5'- gUCCGCgUCGgGGCGCUCgagcagGCGcGCGUa -3'
miRNA:   3'- -GGGCGaAGCgCUGCGAGa-----UGC-UGUAc -5'
29424 5' -54 NC_006151.1 + 66347 0.66 0.951935
Target:  5'- -aCGCgaCGCGGCGCUaCUACG-CGg- -3'
miRNA:   3'- ggGCGaaGCGCUGCGA-GAUGCuGUac -5'
29424 5' -54 NC_006151.1 + 66728 0.75 0.567495
Target:  5'- aCCGCUucgcgcuccugUCGCGGCGCUCcuuccGCGACGc- -3'
miRNA:   3'- gGGCGA-----------AGCGCUGCGAGa----UGCUGUac -5'
29424 5' -54 NC_006151.1 + 67288 0.67 0.943304
Target:  5'- gCCGCUggugcCGCGACGCgc-GCGugGa- -3'
miRNA:   3'- gGGCGAa----GCGCUGCGagaUGCugUac -5'
29424 5' -54 NC_006151.1 + 67992 0.67 0.947737
Target:  5'- gCCCGCcggcgcCGCGGCcacggGCUCgGCGGCGUc -3'
miRNA:   3'- -GGGCGaa----GCGCUG-----CGAGaUGCUGUAc -5'
29424 5' -54 NC_006151.1 + 68040 0.7 0.840297
Target:  5'- gCCCGCcggCGCGGCgggcacggGCUCgGCGACGg- -3'
miRNA:   3'- -GGGCGaa-GCGCUG--------CGAGaUGCUGUac -5'
29424 5' -54 NC_006151.1 + 68239 0.66 0.963151
Target:  5'- gCCCGCgggCGCGucagguagacGCGCgcgGCGACGg- -3'
miRNA:   3'- -GGGCGaa-GCGC----------UGCGagaUGCUGUac -5'
29424 5' -54 NC_006151.1 + 69552 0.66 0.959638
Target:  5'- gCCCGC-UCGCcACGUggCUGCGcACcgGg -3'
miRNA:   3'- -GGGCGaAGCGcUGCGa-GAUGC-UGuaC- -5'
29424 5' -54 NC_006151.1 + 69582 0.66 0.966445
Target:  5'- gCCGCgcCGCGACgaGCUCggccgcGCGGCGc- -3'
miRNA:   3'- gGGCGaaGCGCUG--CGAGa-----UGCUGUac -5'
29424 5' -54 NC_006151.1 + 71758 0.68 0.917538
Target:  5'- -gCGCcgCGCGugGUcCUGCGGCAg- -3'
miRNA:   3'- ggGCGaaGCGCugCGaGAUGCUGUac -5'
29424 5' -54 NC_006151.1 + 72044 0.67 0.947737
Target:  5'- cCCCGCcgCGCaGCGuCUCgGCGGCGc- -3'
miRNA:   3'- -GGGCGaaGCGcUGC-GAGaUGCUGUac -5'
29424 5' -54 NC_006151.1 + 72251 0.71 0.759765
Target:  5'- gCCCGCggcCGcCGACGCcgaGCGGCGUGg -3'
miRNA:   3'- -GGGCGaa-GC-GCUGCGagaUGCUGUAC- -5'
29424 5' -54 NC_006151.1 + 73337 0.69 0.878742
Target:  5'- gCCGCgcgUgGCGAagagGUUCUGCGGCAg- -3'
miRNA:   3'- gGGCGa--AgCGCUg---CGAGAUGCUGUac -5'
29424 5' -54 NC_006151.1 + 77689 0.66 0.959638
Target:  5'- -gCGCUcUCGCuGACGCUCgugcACGACc-- -3'
miRNA:   3'- ggGCGA-AGCG-CUGCGAGa---UGCUGuac -5'
29424 5' -54 NC_006151.1 + 78040 0.7 0.823534
Target:  5'- uCCCgGCgaCGCGGCGCaUCUggGCGACGc- -3'
miRNA:   3'- -GGG-CGaaGCGCUGCG-AGA--UGCUGUac -5'
29424 5' -54 NC_006151.1 + 78079 0.67 0.923174
Target:  5'- gCCUGUcccUGCaGAUGCUCUGCGACcucGUGg -3'
miRNA:   3'- -GGGCGaa-GCG-CUGCGAGAUGCUG---UAC- -5'
29424 5' -54 NC_006151.1 + 79784 0.67 0.928569
Target:  5'- gCCGgaUCGCGGC-CUCggcGCGGCAc- -3'
miRNA:   3'- gGGCgaAGCGCUGcGAGa--UGCUGUac -5'
29424 5' -54 NC_006151.1 + 81424 0.72 0.710611
Target:  5'- cCCCGCcgaggUCGCGGCGCagCgagACGGCGc- -3'
miRNA:   3'- -GGGCGa----AGCGCUGCGa-Ga--UGCUGUac -5'
29424 5' -54 NC_006151.1 + 84916 0.69 0.885787
Target:  5'- gCCGCg-CGCGGCGCcgcCUcCGGCGUGc -3'
miRNA:   3'- gGGCGaaGCGCUGCGa--GAuGCUGUAC- -5'
29424 5' -54 NC_006151.1 + 85350 0.66 0.963151
Target:  5'- gCUCGCcgCGCuGGCGCgcCUGCG-CGUGg -3'
miRNA:   3'- -GGGCGaaGCG-CUGCGa-GAUGCuGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.