miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29424 5' -54 NC_006151.1 + 5443 0.67 0.947737
Target:  5'- gCCGCgg-GCGACGgUCUcgACGGCGa- -3'
miRNA:   3'- gGGCGaagCGCUGCgAGA--UGCUGUac -5'
29424 5' -54 NC_006151.1 + 10191 0.69 0.863991
Target:  5'- uUCGCcggUCGCGGCGCgg-GCGGCGg- -3'
miRNA:   3'- gGGCGa--AGCGCUGCGagaUGCUGUac -5'
29424 5' -54 NC_006151.1 + 10618 0.7 0.848396
Target:  5'- cCCCGCgcgccCGCGuGCGCUCgugccggcGCGGCAUc -3'
miRNA:   3'- -GGGCGaa---GCGC-UGCGAGa-------UGCUGUAc -5'
29424 5' -54 NC_006151.1 + 15091 0.7 0.823534
Target:  5'- cCCCGacaCGCGGCGCcUCggggcCGACGUGa -3'
miRNA:   3'- -GGGCgaaGCGCUGCG-AGau---GCUGUAC- -5'
29424 5' -54 NC_006151.1 + 15285 0.67 0.938633
Target:  5'- cCCCGCUgCGCaGCGCgCUGCG-CGa- -3'
miRNA:   3'- -GGGCGAaGCGcUGCGaGAUGCuGUac -5'
29424 5' -54 NC_006151.1 + 26982 0.66 0.966445
Target:  5'- gCUGCgcagCGgGGCGCUCUGCucgGGCGa- -3'
miRNA:   3'- gGGCGaa--GCgCUGCGAGAUG---CUGUac -5'
29424 5' -54 NC_006151.1 + 27263 0.67 0.938633
Target:  5'- gCCCGUacUCGgGGUGCUCgACGACGUa -3'
miRNA:   3'- -GGGCGa-AGCgCUGCGAGaUGCUGUAc -5'
29424 5' -54 NC_006151.1 + 31744 0.67 0.928569
Target:  5'- gCCCGCgccgGgGACGCgcCUGCGGCGg- -3'
miRNA:   3'- -GGGCGaag-CgCUGCGa-GAUGCUGUac -5'
29424 5' -54 NC_006151.1 + 38178 0.66 0.951935
Target:  5'- gCCCGCacCGUGGCGCcgcuggugcgCUACaGCGUGg -3'
miRNA:   3'- -GGGCGaaGCGCUGCGa---------GAUGcUGUAC- -5'
29424 5' -54 NC_006151.1 + 39153 0.7 0.840297
Target:  5'- aCCCGCgcCGCGGCGgcCUCU-CGGCGc- -3'
miRNA:   3'- -GGGCGaaGCGCUGC--GAGAuGCUGUac -5'
29424 5' -54 NC_006151.1 + 47936 0.67 0.941928
Target:  5'- uUCCGCUUCGCcACGCUCcAguugccccgcccccCGGCAc- -3'
miRNA:   3'- -GGGCGAAGCGcUGCGAGaU--------------GCUGUac -5'
29424 5' -54 NC_006151.1 + 49088 0.71 0.756885
Target:  5'- cCCCGagccuggccaacauCUUCGCGGCGgUCcggGCGACGUa -3'
miRNA:   3'- -GGGC--------------GAAGCGCUGCgAGa--UGCUGUAc -5'
29424 5' -54 NC_006151.1 + 51227 0.67 0.938633
Target:  5'- gCCCGCgcaggcggCGCGAgCGCUCgGCG-CAg- -3'
miRNA:   3'- -GGGCGaa------GCGCU-GCGAGaUGCuGUac -5'
29424 5' -54 NC_006151.1 + 53983 0.67 0.941928
Target:  5'- cUCCGCgggcgUCGCGgcgagcucccggacGCGCUCcACGAUcgGc -3'
miRNA:   3'- -GGGCGa----AGCGC--------------UGCGAGaUGCUGuaC- -5'
29424 5' -54 NC_006151.1 + 54344 0.69 0.856296
Target:  5'- -aCGCUcaaCGCGGCGCgCUACGAggaCGUGg -3'
miRNA:   3'- ggGCGAa--GCGCUGCGaGAUGCU---GUAC- -5'
29424 5' -54 NC_006151.1 + 54422 0.73 0.690412
Target:  5'- -gCGCUggCGCGGCGCUUcgGCGACGa- -3'
miRNA:   3'- ggGCGAa-GCGCUGCGAGa-UGCUGUac -5'
29424 5' -54 NC_006151.1 + 54874 0.69 0.878742
Target:  5'- gCCGCUguggCGCGACGCgagCUGCucuuuGACu-- -3'
miRNA:   3'- gGGCGAa---GCGCUGCGa--GAUG-----CUGuac -5'
29424 5' -54 NC_006151.1 + 55870 0.69 0.885787
Target:  5'- aCCGagaUCGCGGCGCUgUcGCGGCGg- -3'
miRNA:   3'- gGGCga-AGCGCUGCGAgA-UGCUGUac -5'
29424 5' -54 NC_006151.1 + 57473 0.68 0.917538
Target:  5'- gCCGCgcCGCGGCGgcCUCgcagGCGACGc- -3'
miRNA:   3'- gGGCGaaGCGCUGC--GAGa---UGCUGUac -5'
29424 5' -54 NC_006151.1 + 63690 0.69 0.871475
Target:  5'- cUCCGaCUgggCGUGcGCGUUCgcgGCGACGUGg -3'
miRNA:   3'- -GGGC-GAa--GCGC-UGCGAGa--UGCUGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.