miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29424 5' -54 NC_006151.1 + 98736 1.11 0.003382
Target:  5'- cCCCGCUUCGCGACGCUCUACGACAUGg -3'
miRNA:   3'- -GGGCGAAGCGCUGCGAGAUGCUGUAC- -5'
29424 5' -54 NC_006151.1 + 123101 0.79 0.348385
Target:  5'- aCCGCcucUCGCGGCGCUCgGCGGCGa- -3'
miRNA:   3'- gGGCGa--AGCGCUGCGAGaUGCUGUac -5'
29424 5' -54 NC_006151.1 + 122551 0.78 0.397444
Target:  5'- gCCCGCcUCGCGGCGCcUgUACGcCGUGa -3'
miRNA:   3'- -GGGCGaAGCGCUGCG-AgAUGCuGUAC- -5'
29424 5' -54 NC_006151.1 + 101650 0.78 0.423583
Target:  5'- gCCGCcgUGCccGCGCUCUACGGCGUGg -3'
miRNA:   3'- gGGCGaaGCGc-UGCGAGAUGCUGUAC- -5'
29424 5' -54 NC_006151.1 + 102594 0.76 0.517491
Target:  5'- uCCCGCgagUCGCagcgGGCGCUCgagcgggcgcGCGACGUGa -3'
miRNA:   3'- -GGGCGa--AGCG----CUGCGAGa---------UGCUGUAC- -5'
29424 5' -54 NC_006151.1 + 66728 0.75 0.567495
Target:  5'- aCCGCUucgcgcuccugUCGCGGCGCUCcuuccGCGACGc- -3'
miRNA:   3'- gGGCGA-----------AGCGCUGCGAGa----UGCUGUac -5'
29424 5' -54 NC_006151.1 + 136807 0.74 0.622747
Target:  5'- gCCGCgcUCGCGGCcgacgcgccgcgcggGCUCUGCGACGc- -3'
miRNA:   3'- gGGCGa-AGCGCUG---------------CGAGAUGCUGUac -5'
29424 5' -54 NC_006151.1 + 90158 0.74 0.639212
Target:  5'- gCCCGCUg-GCGACGCag-ACGACGUu -3'
miRNA:   3'- -GGGCGAagCGCUGCGagaUGCUGUAc -5'
29424 5' -54 NC_006151.1 + 86477 0.73 0.680234
Target:  5'- cUuuGCgcaCGUGGCGCUCUGCGugAUc -3'
miRNA:   3'- -GggCGaa-GCGCUGCGAGAUGCugUAc -5'
29424 5' -54 NC_006151.1 + 54422 0.73 0.690412
Target:  5'- -gCGCUggCGCGGCGCUUcgGCGACGa- -3'
miRNA:   3'- ggGCGAa-GCGCUGCGAGa-UGCUGUac -5'
29424 5' -54 NC_006151.1 + 100681 0.73 0.690412
Target:  5'- -gCGCUcgUCGCGACGCUCcGCGAgAc- -3'
miRNA:   3'- ggGCGA--AGCGCUGCGAGaUGCUgUac -5'
29424 5' -54 NC_006151.1 + 119903 0.72 0.710611
Target:  5'- --aGCUcCGCGacGCGCUCUACGACGc- -3'
miRNA:   3'- gggCGAaGCGC--UGCGAGAUGCUGUac -5'
29424 5' -54 NC_006151.1 + 81424 0.72 0.710611
Target:  5'- cCCCGCcgaggUCGCGGCGCagCgagACGGCGc- -3'
miRNA:   3'- -GGGCGa----AGCGCUGCGa-Ga--UGCUGUac -5'
29424 5' -54 NC_006151.1 + 96866 0.72 0.710611
Target:  5'- gCCCGCcgggCGCGGCGCgcgCgGgGGCAUGa -3'
miRNA:   3'- -GGGCGaa--GCGCUGCGa--GaUgCUGUAC- -5'
29424 5' -54 NC_006151.1 + 119085 0.72 0.720614
Target:  5'- uCUCGCaggcCGCGGCGCUCggcGCGuACGUGa -3'
miRNA:   3'- -GGGCGaa--GCGCUGCGAGa--UGC-UGUAC- -5'
29424 5' -54 NC_006151.1 + 123900 0.72 0.73054
Target:  5'- cCCCGCcgUGCGGCGCg--GCGGcCGUGa -3'
miRNA:   3'- -GGGCGaaGCGCUGCGagaUGCU-GUAC- -5'
29424 5' -54 NC_006151.1 + 130728 0.72 0.740381
Target:  5'- gCCCGCgcggcCGCGGCGCagCgccacccacgACGGCAUGg -3'
miRNA:   3'- -GGGCGaa---GCGCUGCGa-Ga---------UGCUGUAC- -5'
29424 5' -54 NC_006151.1 + 49088 0.71 0.756885
Target:  5'- cCCCGagccuggccaacauCUUCGCGGCGgUCcggGCGACGUa -3'
miRNA:   3'- -GGGC--------------GAAGCGCUGCgAGa--UGCUGUAc -5'
29424 5' -54 NC_006151.1 + 72251 0.71 0.759765
Target:  5'- gCCCGCggcCGcCGACGCcgaGCGGCGUGg -3'
miRNA:   3'- -GGGCGaa-GC-GCUGCGagaUGCUGUAC- -5'
29424 5' -54 NC_006151.1 + 99086 0.71 0.759765
Target:  5'- aCCGUggCGCGGCGC-CUGCGcACGg- -3'
miRNA:   3'- gGGCGaaGCGCUGCGaGAUGC-UGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.