miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29425 3' -57 NC_006151.1 + 120061 0.66 0.8305
Target:  5'- --gGGCAGCCCGUggaggggcgcaacuUccgcaaccaguuccaGCCGGUgCUGCGCc -3'
miRNA:   3'- uagUCGUCGGGCA--------------A---------------CGGCUA-GACGUG- -5'
29425 3' -57 NC_006151.1 + 106685 0.66 0.829646
Target:  5'- cUCGGCGcGCCgGgcGCCGGcgacCUGUACg -3'
miRNA:   3'- uAGUCGU-CGGgCaaCGGCUa---GACGUG- -5'
29425 3' -57 NC_006151.1 + 91300 0.66 0.829646
Target:  5'- cGUCAGCAGCCgc--GCCGGgaagGCGCc -3'
miRNA:   3'- -UAGUCGUCGGgcaaCGGCUaga-CGUG- -5'
29425 3' -57 NC_006151.1 + 107014 0.66 0.829646
Target:  5'- --gAGCGGCUcuCGgcGCUGAUCgcgGCGCg -3'
miRNA:   3'- uagUCGUCGG--GCaaCGGCUAGa--CGUG- -5'
29425 3' -57 NC_006151.1 + 81882 0.66 0.829646
Target:  5'- -gCAGgAGCgCCGgcGCCGAg--GCGCg -3'
miRNA:   3'- uaGUCgUCG-GGCaaCGGCUagaCGUG- -5'
29425 3' -57 NC_006151.1 + 115594 0.66 0.821004
Target:  5'- cUCgAGCAGCUCGcgcgugGCCcagcgcGUCUGCACg -3'
miRNA:   3'- uAG-UCGUCGGGCaa----CGGc-----UAGACGUG- -5'
29425 3' -57 NC_006151.1 + 61214 0.66 0.821004
Target:  5'- uUCAGCAGCgCCGUcgucuUGCCcGAgcccaUCggaGCGCg -3'
miRNA:   3'- uAGUCGUCG-GGCA-----ACGG-CU-----AGa--CGUG- -5'
29425 3' -57 NC_006151.1 + 78720 0.66 0.821004
Target:  5'- -aCGGC-GCCCGUgggGCgCGcgCUGCGg -3'
miRNA:   3'- uaGUCGuCGGGCAa--CG-GCuaGACGUg -5'
29425 3' -57 NC_006151.1 + 19299 0.66 0.821004
Target:  5'- -cCAGCGGCgCGggcgGCCGGUCgccCACc -3'
miRNA:   3'- uaGUCGUCGgGCaa--CGGCUAGac-GUG- -5'
29425 3' -57 NC_006151.1 + 38282 0.66 0.821004
Target:  5'- ---cGCGGCCCGgcucGCCGAggccgCcGCGCg -3'
miRNA:   3'- uaguCGUCGGGCaa--CGGCUa----GaCGUG- -5'
29425 3' -57 NC_006151.1 + 59834 0.66 0.821004
Target:  5'- uGUCGGCcGCCaccgGCCGGUCcgggggGCGCa -3'
miRNA:   3'- -UAGUCGuCGGgcaaCGGCUAGa-----CGUG- -5'
29425 3' -57 NC_006151.1 + 73470 0.67 0.784741
Target:  5'- ---uGCAGCCCGccGCCGcUCucggUGCGCg -3'
miRNA:   3'- uaguCGUCGGGCaaCGGCuAG----ACGUG- -5'
29425 3' -57 NC_006151.1 + 64943 0.67 0.765717
Target:  5'- cGUCAGC-GCCUG--GCCGcgCUGCGg -3'
miRNA:   3'- -UAGUCGuCGGGCaaCGGCuaGACGUg -5'
29425 3' -57 NC_006151.1 + 64772 0.67 0.765717
Target:  5'- -gCGGgGGCUgGUUGCCGGg--GCGCg -3'
miRNA:   3'- uaGUCgUCGGgCAACGGCUagaCGUG- -5'
29425 3' -57 NC_006151.1 + 14071 0.67 0.765717
Target:  5'- --uGGCGGCCCG--GCCGA-CgGCACu -3'
miRNA:   3'- uagUCGUCGGGCaaCGGCUaGaCGUG- -5'
29425 3' -57 NC_006151.1 + 122170 0.67 0.756016
Target:  5'- gAUCGGCggcgGGCUCGUggUGCCGccggagCUGUACg -3'
miRNA:   3'- -UAGUCG----UCGGGCA--ACGGCua----GACGUG- -5'
29425 3' -57 NC_006151.1 + 119487 0.67 0.753083
Target:  5'- -cCGGCAGCCuCGacGCCGAgguccccugcucgcUCUGCGa -3'
miRNA:   3'- uaGUCGUCGG-GCaaCGGCU--------------AGACGUg -5'
29425 3' -57 NC_006151.1 + 117247 0.67 0.746201
Target:  5'- cGUCGGCgGGCCCGagGCgCGggCcGCGCg -3'
miRNA:   3'- -UAGUCG-UCGGGCaaCG-GCuaGaCGUG- -5'
29425 3' -57 NC_006151.1 + 36505 0.67 0.746201
Target:  5'- gGUCGGUgAGCCCGg-GCCGG-CgGCGCg -3'
miRNA:   3'- -UAGUCG-UCGGGCaaCGGCUaGaCGUG- -5'
29425 3' -57 NC_006151.1 + 30924 0.67 0.746201
Target:  5'- --gGGCGGCCCGc-GCgGAUCgcccGCGCg -3'
miRNA:   3'- uagUCGUCGGGCaaCGgCUAGa---CGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.