miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29425 3' -57 NC_006151.1 + 14071 0.67 0.765717
Target:  5'- --uGGCGGCCCG--GCCGA-CgGCACu -3'
miRNA:   3'- uagUCGUCGGGCaaCGGCUaGaCGUG- -5'
29425 3' -57 NC_006151.1 + 19299 0.66 0.821004
Target:  5'- -cCAGCGGCgCGggcgGCCGGUCgccCACc -3'
miRNA:   3'- uaGUCGUCGgGCaa--CGGCUAGac-GUG- -5'
29425 3' -57 NC_006151.1 + 22121 0.68 0.726269
Target:  5'- uUCAGCAGCCgGUccaccUGCgGGUCggagaucaGCGCc -3'
miRNA:   3'- uAGUCGUCGGgCA-----ACGgCUAGa-------CGUG- -5'
29425 3' -57 NC_006151.1 + 30924 0.67 0.746201
Target:  5'- --gGGCGGCCCGc-GCgGAUCgcccGCGCg -3'
miRNA:   3'- uagUCGUCGGGCaaCGgCUAGa---CGUG- -5'
29425 3' -57 NC_006151.1 + 36505 0.67 0.746201
Target:  5'- gGUCGGUgAGCCCGg-GCCGG-CgGCGCg -3'
miRNA:   3'- -UAGUCG-UCGGGCaaCGGCUaGaCGUG- -5'
29425 3' -57 NC_006151.1 + 38282 0.66 0.821004
Target:  5'- ---cGCGGCCCGgcucGCCGAggccgCcGCGCg -3'
miRNA:   3'- uaguCGUCGGGCaa--CGGCUa----GaCGUG- -5'
29425 3' -57 NC_006151.1 + 39571 0.69 0.643937
Target:  5'- -cCuGCAcCCCGggGCCGAgccgCUGCGCc -3'
miRNA:   3'- uaGuCGUcGGGCaaCGGCUa---GACGUG- -5'
29425 3' -57 NC_006151.1 + 43607 0.68 0.716172
Target:  5'- cUCuGCGGCCCGUU-CCG-UC-GCACa -3'
miRNA:   3'- uAGuCGUCGGGCAAcGGCuAGaCGUG- -5'
29425 3' -57 NC_006151.1 + 53435 0.69 0.66372
Target:  5'- --gAGCAGCCCGgccucGUCGAUCacgaugacguugcUGCGCg -3'
miRNA:   3'- uagUCGUCGGGCaa---CGGCUAG-------------ACGUG- -5'
29425 3' -57 NC_006151.1 + 59834 0.66 0.821004
Target:  5'- uGUCGGCcGCCaccgGCCGGUCcgggggGCGCa -3'
miRNA:   3'- -UAGUCGuCGGgcaaCGGCUAGa-----CGUG- -5'
29425 3' -57 NC_006151.1 + 61000 0.71 0.499585
Target:  5'- gAUCAGguGCUCGUccacgcggUGCaggcucuCGAUCUGCACc -3'
miRNA:   3'- -UAGUCguCGGGCA--------ACG-------GCUAGACGUG- -5'
29425 3' -57 NC_006151.1 + 61214 0.66 0.821004
Target:  5'- uUCAGCAGCgCCGUcgucuUGCCcGAgcccaUCggaGCGCg -3'
miRNA:   3'- uAGUCGUCG-GGCA-----ACGG-CU-----AGa--CGUG- -5'
29425 3' -57 NC_006151.1 + 64772 0.67 0.765717
Target:  5'- -gCGGgGGCUgGUUGCCGGg--GCGCg -3'
miRNA:   3'- uaGUCgUCGGgCAACGGCUagaCGUG- -5'
29425 3' -57 NC_006151.1 + 64943 0.67 0.765717
Target:  5'- cGUCAGC-GCCUG--GCCGcgCUGCGg -3'
miRNA:   3'- -UAGUCGuCGGGCaaCGGCuaGACGUg -5'
29425 3' -57 NC_006151.1 + 65081 0.71 0.510443
Target:  5'- cAUCAGCA-CCCGcguggGCCGGUC-GCGCg -3'
miRNA:   3'- -UAGUCGUcGGGCaa---CGGCUAGaCGUG- -5'
29425 3' -57 NC_006151.1 + 67847 0.75 0.340806
Target:  5'- cUCAGCAGCCCGgcgagccggcGCCGAggugGCGCg -3'
miRNA:   3'- uAGUCGUCGGGCaa--------CGGCUaga-CGUG- -5'
29425 3' -57 NC_006151.1 + 69999 0.69 0.623076
Target:  5'- cGUCAGCAcGCUcucgaCGgcGCCcGUCUGCACg -3'
miRNA:   3'- -UAGUCGU-CGG-----GCaaCGGcUAGACGUG- -5'
29425 3' -57 NC_006151.1 + 70631 0.71 0.500568
Target:  5'- cUCGGCGGCgCCGUgGCCGcgCgcgagGCGCc -3'
miRNA:   3'- uAGUCGUCG-GGCAaCGGCuaGa----CGUG- -5'
29425 3' -57 NC_006151.1 + 73470 0.67 0.784741
Target:  5'- ---uGCAGCCCGccGCCGcUCucggUGCGCg -3'
miRNA:   3'- uaguCGUCGGGCaaCGGCuAG----ACGUG- -5'
29425 3' -57 NC_006151.1 + 78720 0.66 0.821004
Target:  5'- -aCGGC-GCCCGUgggGCgCGcgCUGCGg -3'
miRNA:   3'- uaGUCGuCGGGCAa--CG-GCuaGACGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.