miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29425 3' -57 NC_006151.1 + 136932 0.7 0.560912
Target:  5'- -gCAGCAGCCgGgcGCCGA-CgGCGCc -3'
miRNA:   3'- uaGUCGUCGGgCaaCGGCUaGaCGUG- -5'
29425 3' -57 NC_006151.1 + 133315 0.7 0.602243
Target:  5'- --gGGCGGCCCG-UGUCGAg--GCGCg -3'
miRNA:   3'- uagUCGUCGGGCaACGGCUagaCGUG- -5'
29425 3' -57 NC_006151.1 + 129333 0.67 0.739268
Target:  5'- gGUUAGCGGCCCcggggcggccggcgcGCCGAUaaaUGCGCu -3'
miRNA:   3'- -UAGUCGUCGGGcaa------------CGGCUAg--ACGUG- -5'
29425 3' -57 NC_006151.1 + 122170 0.67 0.756016
Target:  5'- gAUCGGCggcgGGCUCGUggUGCCGccggagCUGUACg -3'
miRNA:   3'- -UAGUCG----UCGGGCA--ACGGCua----GACGUG- -5'
29425 3' -57 NC_006151.1 + 120061 0.66 0.8305
Target:  5'- --gGGCAGCCCGUggaggggcgcaacuUccgcaaccaguuccaGCCGGUgCUGCGCc -3'
miRNA:   3'- uagUCGUCGGGCA--------------A---------------CGGCUA-GACGUG- -5'
29425 3' -57 NC_006151.1 + 119487 0.67 0.753083
Target:  5'- -cCGGCAGCCuCGacGCCGAgguccccugcucgcUCUGCGa -3'
miRNA:   3'- uaGUCGUCGG-GCaaCGGCU--------------AGACGUg -5'
29425 3' -57 NC_006151.1 + 118707 0.7 0.560912
Target:  5'- uUCAaCGGCCCGcucUGCCGccugCUGCACg -3'
miRNA:   3'- uAGUcGUCGGGCa--ACGGCua--GACGUG- -5'
29425 3' -57 NC_006151.1 + 117247 0.67 0.746201
Target:  5'- cGUCGGCgGGCCCGagGCgCGggCcGCGCg -3'
miRNA:   3'- -UAGUCG-UCGGGCaaCG-GCuaGaCGUG- -5'
29425 3' -57 NC_006151.1 + 115594 0.66 0.821004
Target:  5'- cUCgAGCAGCUCGcgcgugGCCcagcgcGUCUGCACg -3'
miRNA:   3'- uAG-UCGUCGGGCaa----CGGc-----UAGACGUG- -5'
29425 3' -57 NC_006151.1 + 107014 0.66 0.829646
Target:  5'- --gAGCGGCUcuCGgcGCUGAUCgcgGCGCg -3'
miRNA:   3'- uagUCGUCGG--GCaaCGGCUAGa--CGUG- -5'
29425 3' -57 NC_006151.1 + 106685 0.66 0.829646
Target:  5'- cUCGGCGcGCCgGgcGCCGGcgacCUGUACg -3'
miRNA:   3'- uAGUCGU-CGGgCaaCGGCUa---GACGUG- -5'
29425 3' -57 NC_006151.1 + 105685 0.69 0.643937
Target:  5'- -aCGGCGGCgCGggGCCGAcgCcgGCGCg -3'
miRNA:   3'- uaGUCGUCGgGCaaCGGCUa-Ga-CGUG- -5'
29425 3' -57 NC_006151.1 + 104600 0.74 0.381351
Target:  5'- -gCGGCAGCCgCGgcGCCGAgaUCUGcCGCg -3'
miRNA:   3'- uaGUCGUCGG-GCaaCGGCU--AGAC-GUG- -5'
29425 3' -57 NC_006151.1 + 103307 0.68 0.675133
Target:  5'- cUCGcGCGGCgCGacGCCGAgCUGCGCa -3'
miRNA:   3'- uAGU-CGUCGgGCaaCGGCUaGACGUG- -5'
29425 3' -57 NC_006151.1 + 98550 0.68 0.716172
Target:  5'- -aCGGCcGCCCucaccgagGCCGggCUGCGCa -3'
miRNA:   3'- uaGUCGuCGGGcaa-----CGGCuaGACGUG- -5'
29425 3' -57 NC_006151.1 + 98164 1.08 0.001903
Target:  5'- cAUCAGCAGCCCGUUGCCGAUCUGCACg -3'
miRNA:   3'- -UAGUCGUCGGGCAACGGCUAGACGUG- -5'
29425 3' -57 NC_006151.1 + 91300 0.66 0.829646
Target:  5'- cGUCAGCAGCCgc--GCCGGgaagGCGCc -3'
miRNA:   3'- -UAGUCGUCGGgcaaCGGCUaga-CGUG- -5'
29425 3' -57 NC_006151.1 + 90916 0.74 0.364752
Target:  5'- cGUCAGCAGCCCGUgcGCCG-UCUcgaGCGu -3'
miRNA:   3'- -UAGUCGUCGGGCAa-CGGCuAGA---CGUg -5'
29425 3' -57 NC_006151.1 + 81882 0.66 0.829646
Target:  5'- -gCAGgAGCgCCGgcGCCGAg--GCGCg -3'
miRNA:   3'- uaGUCgUCG-GGCaaCGGCUagaCGUG- -5'
29425 3' -57 NC_006151.1 + 78720 0.66 0.821004
Target:  5'- -aCGGC-GCCCGUgggGCgCGcgCUGCGg -3'
miRNA:   3'- uaGUCGuCGGGCAa--CG-GCuaGACGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.