miRNA display CGI


Results 61 - 80 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29425 5' -64.2 NC_006151.1 + 136436 0.67 0.476252
Target:  5'- gCGCacGCCGCGCGcuacGUCGAcgagcgcGUGCGCGc -3'
miRNA:   3'- aGCG--CGGCGCGCcc--CAGCU-------CACGCGC- -5'
29425 5' -64.2 NC_006151.1 + 54626 0.67 0.468297
Target:  5'- gCGCGCCcCGgGGGGaagCGGcgGCGCGa -3'
miRNA:   3'- aGCGCGGcGCgCCCCa--GCUcaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 61758 0.67 0.468297
Target:  5'- aCGCgGUCGCG-GGGGcCGuGGUGCuGCGg -3'
miRNA:   3'- aGCG-CGGCGCgCCCCaGC-UCACG-CGC- -5'
29425 5' -64.2 NC_006151.1 + 113042 0.67 0.468297
Target:  5'- -gGUGCUGCGCGGcGG-CG-GaGCGCGa -3'
miRNA:   3'- agCGCGGCGCGCC-CCaGCuCaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 94768 0.67 0.467417
Target:  5'- -gGCGCCGCagcgucuccaugaGCGGcaGGUUGGG-GCGCa -3'
miRNA:   3'- agCGCGGCG-------------CGCC--CCAGCUCaCGCGc -5'
29425 5' -64.2 NC_006151.1 + 123843 0.68 0.459538
Target:  5'- cUGCaGCUGCGCGGGG-CGccGUcGCGCu -3'
miRNA:   3'- aGCG-CGGCGCGCCCCaGCu-CA-CGCGc -5'
29425 5' -64.2 NC_006151.1 + 122953 0.68 0.459538
Target:  5'- -gGCGCCGCGgGGGGcgCGGacgccgGCGaCGg -3'
miRNA:   3'- agCGCGGCGCgCCCCa-GCUca----CGC-GC- -5'
29425 5' -64.2 NC_006151.1 + 113092 0.68 0.459538
Target:  5'- gUCGcCGCCGCcacCGGGGgCGGG-GcCGCGg -3'
miRNA:   3'- -AGC-GCGGCGc--GCCCCaGCUCaC-GCGC- -5'
29425 5' -64.2 NC_006151.1 + 102551 0.68 0.459538
Target:  5'- -gGCGCgCGCGCGGGcccUGuuUGCGCGc -3'
miRNA:   3'- agCGCG-GCGCGCCCca-GCucACGCGC- -5'
29425 5' -64.2 NC_006151.1 + 17075 0.68 0.459538
Target:  5'- cCGgGCCGcCGCcGGGUCaGGcGCGCGc -3'
miRNA:   3'- aGCgCGGC-GCGcCCCAGcUCaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 139167 0.68 0.454325
Target:  5'- cCGCGCCcucguguggaucuuuGUGCuGGcGGUCGGG-GCGCu -3'
miRNA:   3'- aGCGCGG---------------CGCG-CC-CCAGCUCaCGCGc -5'
29425 5' -64.2 NC_006151.1 + 30749 0.68 0.450868
Target:  5'- -aGUGCCGCggGCGGGG-CGGGgGCaGCa -3'
miRNA:   3'- agCGCGGCG--CGCCCCaGCUCaCG-CGc -5'
29425 5' -64.2 NC_006151.1 + 130835 0.68 0.450868
Target:  5'- -gGCGCgGCGCGGaGUCGucgccgucGGcgGCGCGg -3'
miRNA:   3'- agCGCGgCGCGCCcCAGC--------UCa-CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 102675 0.68 0.450868
Target:  5'- uUUGaCGCCGUggacGCGGGGgcgcccggcgCGGGcgGCGCGg -3'
miRNA:   3'- -AGC-GCGGCG----CGCCCCa---------GCUCa-CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 112189 0.68 0.445708
Target:  5'- aUCGCGCCGCGCccgcagcgccuccccGuGGG-CGcAGUcGCGCu -3'
miRNA:   3'- -AGCGCGGCGCG---------------C-CCCaGC-UCA-CGCGc -5'
29425 5' -64.2 NC_006151.1 + 71092 0.68 0.442287
Target:  5'- -gGCGCCGCggGCGcGGG-CGccGUGCGCu -3'
miRNA:   3'- agCGCGGCG--CGC-CCCaGCu-CACGCGc -5'
29425 5' -64.2 NC_006151.1 + 20981 0.68 0.442287
Target:  5'- gCGCGUCGC-CGGGcaCGAGgacgGCGCu -3'
miRNA:   3'- aGCGCGGCGcGCCCcaGCUCa---CGCGc -5'
29425 5' -64.2 NC_006151.1 + 20142 0.68 0.442287
Target:  5'- -gGCGCCGCG-GGGG-CG-GcGCGUGg -3'
miRNA:   3'- agCGCGGCGCgCCCCaGCuCaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 5367 0.68 0.442287
Target:  5'- -gGCGCCG-GCGGGGcugucucugCGGGgGCGCc -3'
miRNA:   3'- agCGCGGCgCGCCCCa--------GCUCaCGCGc -5'
29425 5' -64.2 NC_006151.1 + 81273 0.68 0.442287
Target:  5'- -aGCGCCuCgGCGGGGaucUCGGGcgcgGCGCGc -3'
miRNA:   3'- agCGCGGcG-CGCCCC---AGCUCa---CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.