miRNA display CGI


Results 41 - 60 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29425 5' -64.2 NC_006151.1 + 104921 0.67 0.513299
Target:  5'- gCGCGaCCGCGaCGGGGcccUCGAGcUG-GCc -3'
miRNA:   3'- aGCGC-GGCGC-GCCCC---AGCUC-ACgCGc -5'
29425 5' -64.2 NC_006151.1 + 69524 0.67 0.513299
Target:  5'- cCGCGCCGCGCGaGGG-CGcccUGCa-- -3'
miRNA:   3'- aGCGCGGCGCGC-CCCaGCuc-ACGcgc -5'
29425 5' -64.2 NC_006151.1 + 50008 0.67 0.513299
Target:  5'- gCGCGCCGCGCGcGcGGcCc---GCGCGg -3'
miRNA:   3'- aGCGCGGCGCGC-C-CCaGcucaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 131709 0.67 0.504149
Target:  5'- gCGCGUCGCG-GGGGaUGAGgugguagGCGgGg -3'
miRNA:   3'- aGCGCGGCGCgCCCCaGCUCa------CGCgC- -5'
29425 5' -64.2 NC_006151.1 + 96577 0.67 0.504149
Target:  5'- -aGCGCCGCcucGCGGcG-CGAGgcgccggGCGCGg -3'
miRNA:   3'- agCGCGGCG---CGCCcCaGCUCa------CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 102596 0.67 0.504149
Target:  5'- cCGCgaGUCGCaGCGGGcGcUCGAGcggGCGCGc -3'
miRNA:   3'- aGCG--CGGCG-CGCCC-C-AGCUCa--CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 33917 0.67 0.504149
Target:  5'- cCGCGuCCG-GCGGGcGgaUCGAGgcccGCGCGc -3'
miRNA:   3'- aGCGC-GGCgCGCCC-C--AGCUCa---CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 49211 0.67 0.504149
Target:  5'- cCGUGCgGCGCGGGGUccccggcucccaCGccccgcucggcuGG-GCGCGg -3'
miRNA:   3'- aGCGCGgCGCGCCCCA------------GC------------UCaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 96701 0.67 0.504149
Target:  5'- aUGCGuCCGCGcCGGGGgcggcggcggaCGAGgaggcggcggGCGCGa -3'
miRNA:   3'- aGCGC-GGCGC-GCCCCa----------GCUCa---------CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 90762 0.67 0.49507
Target:  5'- gCGgGCaCGgugGCGGGGUCGGcggGCGCGc -3'
miRNA:   3'- aGCgCG-GCg--CGCCCCAGCUca-CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 120806 0.67 0.49507
Target:  5'- gCGCGCCGCGCGcGaGGUgcuggaCGcGccGCGCGa -3'
miRNA:   3'- aGCGCGGCGCGC-C-CCA------GCuCa-CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 59369 0.67 0.49507
Target:  5'- -gGCGCCGCGCGGccGUCGuc-GCGUc -3'
miRNA:   3'- agCGCGGCGCGCCc-CAGCucaCGCGc -5'
29425 5' -64.2 NC_006151.1 + 117234 0.67 0.49507
Target:  5'- aCGCGCgCGUccacgucgGCGGGccCGAG-GCGCGg -3'
miRNA:   3'- aGCGCG-GCG--------CGCCCcaGCUCaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 121904 0.67 0.49507
Target:  5'- cUCGCGUaCGCGCGGGc-CGAGggggaccGCGUGc -3'
miRNA:   3'- -AGCGCG-GCGCGCCCcaGCUCa------CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 98017 0.67 0.486066
Target:  5'- -gGCGCCGgccaggucCGCGGGGUgGcgcaGCGCGa -3'
miRNA:   3'- agCGCGGC--------GCGCCCCAgCuca-CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 71757 0.67 0.486066
Target:  5'- -aGCGCCGCGCGuGGUCcugcgGCaGCGg -3'
miRNA:   3'- agCGCGGCGCGCcCCAGcuca-CG-CGC- -5'
29425 5' -64.2 NC_006151.1 + 129105 0.67 0.486066
Target:  5'- cUGCGCacgaGCGCcaGGGcCGAG-GCGCGc -3'
miRNA:   3'- aGCGCGg---CGCGc-CCCaGCUCaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 135478 0.67 0.477141
Target:  5'- gCGUGuCCGCGCGGGccaggCG-GcGCGCGg -3'
miRNA:   3'- aGCGC-GGCGCGCCCca---GCuCaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 10419 0.67 0.477141
Target:  5'- gUGaCGCCGCGgGuGGGcCGAGgccgGCGgGg -3'
miRNA:   3'- aGC-GCGGCGCgC-CCCaGCUCa---CGCgC- -5'
29425 5' -64.2 NC_006151.1 + 65174 0.67 0.477141
Target:  5'- gCGCGCgaggcggaaGCGCGGGuccgCGAGcgcgcUGCGCGa -3'
miRNA:   3'- aGCGCGg--------CGCGCCCca--GCUC-----ACGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.