miRNA display CGI


Results 21 - 40 of 173 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29425 5' -64.2 NC_006151.1 + 140367 0.66 0.550531
Target:  5'- cCGCGUCGUcgaGCGcGGcUCGAGcUGCGUGc -3'
miRNA:   3'- aGCGCGGCG---CGC-CCcAGCUC-ACGCGC- -5'
29425 5' -64.2 NC_006151.1 + 137266 0.66 0.54959
Target:  5'- gCGCGCCcggugccCGCGGGcacgcUCGAGgcggccaUGCGCGg -3'
miRNA:   3'- aGCGCGGc------GCGCCCc----AGCUC-------ACGCGC- -5'
29425 5' -64.2 NC_006151.1 + 50090 0.66 0.542074
Target:  5'- aCGCGgCGCGCGuacgcgaucagcuccGGUCcgcGGUGCGCGc -3'
miRNA:   3'- aGCGCgGCGCGCc--------------CCAGc--UCACGCGC- -5'
29425 5' -64.2 NC_006151.1 + 27173 0.66 0.541137
Target:  5'- -gGCGCCGCGUgucGGGGcgccaGGGggccGCGCa -3'
miRNA:   3'- agCGCGGCGCG---CCCCag---CUCa---CGCGc -5'
29425 5' -64.2 NC_006151.1 + 34611 0.66 0.541137
Target:  5'- gCGCGCCgaGCGCGaGGcgCGGGUGgGgCGa -3'
miRNA:   3'- aGCGCGG--CGCGCcCCa-GCUCACgC-GC- -5'
29425 5' -64.2 NC_006151.1 + 133738 0.66 0.541137
Target:  5'- -gGCGagCGaGUGGGGUCGGGcGCGUGc -3'
miRNA:   3'- agCGCg-GCgCGCCCCAGCUCaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 99036 0.66 0.541137
Target:  5'- cCGCGgcccUCGCGCacGGGGacgCGuacGUGCGCGa -3'
miRNA:   3'- aGCGC----GGCGCG--CCCCa--GCu--CACGCGC- -5'
29425 5' -64.2 NC_006151.1 + 54654 0.66 0.540201
Target:  5'- -aGCGCUGCGUGGacgagcacgaccuGGcCGGGcaccUGCGCGu -3'
miRNA:   3'- agCGCGGCGCGCC-------------CCaGCUC----ACGCGC- -5'
29425 5' -64.2 NC_006151.1 + 73040 0.66 0.531797
Target:  5'- -gGCgGUgGCGCGGuGG--GGGUGCGCGg -3'
miRNA:   3'- agCG-CGgCGCGCC-CCagCUCACGCGC- -5'
29425 5' -64.2 NC_006151.1 + 77992 0.66 0.531797
Target:  5'- gCGCGCUGCGCgcgacGGuGGUCaGcgacuuugugcaGGUGCGCu -3'
miRNA:   3'- aGCGCGGCGCG-----CC-CCAG-C------------UCACGCGc -5'
29425 5' -64.2 NC_006151.1 + 85627 0.66 0.531797
Target:  5'- cCGcCGCCGCGCGGcGccagCGGGgacGCGCc -3'
miRNA:   3'- aGC-GCGGCGCGCCcCa---GCUCa--CGCGc -5'
29425 5' -64.2 NC_006151.1 + 2447 0.66 0.530867
Target:  5'- aCGgGCCGCaGCGGGG-CGccgagcccccagcGGUuggccGCGCGg -3'
miRNA:   3'- aGCgCGGCG-CGCCCCaGC-------------UCA-----CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 35108 0.66 0.528078
Target:  5'- cUCGCGcCCGCGCGaGGGauuuUCGGacaaucucauugGCGCGc -3'
miRNA:   3'- -AGCGC-GGCGCGC-CCC----AGCUca----------CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 8259 0.66 0.522517
Target:  5'- gCGCGCCGgGacgccccucCGGGGgaaaGAGUguccccGCGCGg -3'
miRNA:   3'- aGCGCGGCgC---------GCCCCag--CUCA------CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 81878 0.66 0.522517
Target:  5'- aCGCGCaggaGCGCcGGcGcCGAG-GCGCGc -3'
miRNA:   3'- aGCGCGg---CGCGcCC-CaGCUCaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 83207 0.66 0.522517
Target:  5'- gCGCGaggcagucCCGCGUGGucuGGUCGAa-GCGCGg -3'
miRNA:   3'- aGCGC--------GGCGCGCC---CCAGCUcaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 83361 0.66 0.522517
Target:  5'- -gGCGCgCGCGCGGGcG-CGcAG-GCGCc -3'
miRNA:   3'- agCGCG-GCGCGCCC-CaGC-UCaCGCGc -5'
29425 5' -64.2 NC_006151.1 + 89476 0.66 0.522517
Target:  5'- cCGCGUCacguGCGCGGcGG-CGAGccgguacGCGCGg -3'
miRNA:   3'- aGCGCGG----CGCGCC-CCaGCUCa------CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 9488 0.66 0.522517
Target:  5'- cCGCgGCCGCgGCGuGGGagagCGGG-GCGUGu -3'
miRNA:   3'- aGCG-CGGCG-CGC-CCCa---GCUCaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 68831 0.66 0.522517
Target:  5'- cCGCGCCgGCGUGuGcUCGAGgcgccGCGCGa -3'
miRNA:   3'- aGCGCGG-CGCGCcCcAGCUCa----CGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.