miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29425 5' -64.2 NC_006151.1 + 57143 0.73 0.228283
Target:  5'- cUGCGCaCGCgGCGGGGgCGAGggcgucccccgGCGCGg -3'
miRNA:   3'- aGCGCG-GCG-CGCCCCaGCUCa----------CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 97627 0.72 0.250071
Target:  5'- -aGCGgCGCGCGGccauGUCGuuGGUGCGCGc -3'
miRNA:   3'- agCGCgGCGCGCCc---CAGC--UCACGCGC- -5'
29425 5' -64.2 NC_006151.1 + 64472 0.72 0.250071
Target:  5'- gCGCGCCGCcgcgGCGGGGaCGcccgcGG-GCGCGg -3'
miRNA:   3'- aGCGCGGCG----CGCCCCaGC-----UCaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 97817 0.72 0.250071
Target:  5'- gUGCGCCGguCGCGGuaguuGGUCGucacGUGCGCGc -3'
miRNA:   3'- aGCGCGGC--GCGCC-----CCAGCu---CACGCGC- -5'
29425 5' -64.2 NC_006151.1 + 2603 0.72 0.255779
Target:  5'- gCGCGCgGCGgcagcgggacCGGGGUcCGGGgcccgGCGCGg -3'
miRNA:   3'- aGCGCGgCGC----------GCCCCA-GCUCa----CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 59528 0.72 0.255779
Target:  5'- -aGCGCCGCGUGaGGGcCcAGcGCGCGg -3'
miRNA:   3'- agCGCGGCGCGC-CCCaGcUCaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 76649 0.72 0.255779
Target:  5'- gCGaCGaCCGCGUGcGGGcgCGuGUGCGCGg -3'
miRNA:   3'- aGC-GC-GGCGCGC-CCCa-GCuCACGCGC- -5'
29425 5' -64.2 NC_006151.1 + 66531 0.72 0.267516
Target:  5'- gCGCGCCGCGCucuucGGGGgCGc--GCGCGg -3'
miRNA:   3'- aGCGCGGCGCG-----CCCCaGCucaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 118147 0.72 0.267516
Target:  5'- aCGaCGCCGCgGCGGuGG-CGccgcuGGUGCGCGg -3'
miRNA:   3'- aGC-GCGGCG-CGCC-CCaGC-----UCACGCGC- -5'
29425 5' -64.2 NC_006151.1 + 30267 0.71 0.273546
Target:  5'- -gGCGCCacagacagcgGCGCGGGGggaGGGUGUGUa -3'
miRNA:   3'- agCGCGG----------CGCGCCCCag-CUCACGCGc -5'
29425 5' -64.2 NC_006151.1 + 136823 0.71 0.273546
Target:  5'- aCGCGCCGCGCGGGcucugCGA---CGCGg -3'
miRNA:   3'- aGCGCGGCGCGCCCca---GCUcacGCGC- -5'
29425 5' -64.2 NC_006151.1 + 5238 0.71 0.273546
Target:  5'- -aGCGCCGCGCGGcGGcggCGGGggcccgggGgGCGg -3'
miRNA:   3'- agCGCGGCGCGCC-CCa--GCUCa-------CgCGC- -5'
29425 5' -64.2 NC_006151.1 + 133779 0.71 0.274155
Target:  5'- aCGCGCCGCcccGCGGGGgaggcgugcagcaucCGGGUGCaCGu -3'
miRNA:   3'- aGCGCGGCG---CGCCCCa--------------GCUCACGcGC- -5'
29425 5' -64.2 NC_006151.1 + 135902 0.71 0.279684
Target:  5'- gUCGcCGCCGCGacccCGGcGGUCGuGcGCGCGc -3'
miRNA:   3'- -AGC-GCGGCGC----GCC-CCAGCuCaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 97324 0.71 0.279684
Target:  5'- gCGCGCUGCGCGGGucGUUGAacagGUaCGCGg -3'
miRNA:   3'- aGCGCGGCGCGCCC--CAGCU----CAcGCGC- -5'
29425 5' -64.2 NC_006151.1 + 63778 0.71 0.279684
Target:  5'- cCGCGUCGCcagGCGGGGUCGGccGUcgccaGCGCc -3'
miRNA:   3'- aGCGCGGCG---CGCCCCAGCU--CA-----CGCGc -5'
29425 5' -64.2 NC_006151.1 + 127408 0.71 0.279684
Target:  5'- gUCGacgggaGCC-CGCGGGGUCGccucggcgcucGUGCGCGa -3'
miRNA:   3'- -AGCg-----CGGcGCGCCCCAGCu----------CACGCGC- -5'
29425 5' -64.2 NC_006151.1 + 4329 0.71 0.285932
Target:  5'- cCGgGCUGCGCGGcGG-CGAaGgcgGCGCGg -3'
miRNA:   3'- aGCgCGGCGCGCC-CCaGCU-Ca--CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 131865 0.71 0.285932
Target:  5'- gCGCGCCG-GCGGcGUCGGGU-CGCa -3'
miRNA:   3'- aGCGCGGCgCGCCcCAGCUCAcGCGc -5'
29425 5' -64.2 NC_006151.1 + 39463 0.71 0.292289
Target:  5'- gUGCGCCGUGCGcuGGccCGGGUGcCGCGa -3'
miRNA:   3'- aGCGCGGCGCGCc-CCa-GCUCAC-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.