miRNA display CGI


Results 1 - 20 of 173 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29425 5' -64.2 NC_006151.1 + 98198 1.09 0.000609
Target:  5'- gUCGCGCCGCGCGGGGUCGAGUGCGCGg -3'
miRNA:   3'- -AGCGCGGCGCGCCCCAGCUCACGCGC- -5'
29425 5' -64.2 NC_006151.1 + 138718 0.86 0.028268
Target:  5'- gCGCGCCGCGCGcGGGUCGuGUacGCGCGc -3'
miRNA:   3'- aGCGCGGCGCGC-CCCAGCuCA--CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 104014 0.81 0.059473
Target:  5'- gCGCGCCGCGCGGcggaGGUgGAGcGCGCGc -3'
miRNA:   3'- aGCGCGGCGCGCC----CCAgCUCaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 21580 0.8 0.078545
Target:  5'- -aGgGCCGCGCGGGGUCGAuGgcguacgGCGUGg -3'
miRNA:   3'- agCgCGGCGCGCCCCAGCU-Ca------CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 100416 0.78 0.095959
Target:  5'- gCGCGCCGaCGCGGGGgCGc-UGCGCGg -3'
miRNA:   3'- aGCGCGGC-GCGCCCCaGCucACGCGC- -5'
29425 5' -64.2 NC_006151.1 + 84380 0.78 0.100353
Target:  5'- aUCGCGgCGCGCGGGGacgggcggggagCGGGUGgGCGc -3'
miRNA:   3'- -AGCGCgGCGCGCCCCa-----------GCUCACgCGC- -5'
29425 5' -64.2 NC_006151.1 + 20866 0.78 0.108638
Target:  5'- cUCGCGCguguagcaggCGCGCuuGGGGUCGAG-GCGCa -3'
miRNA:   3'- -AGCGCG----------GCGCG--CCCCAGCUCaCGCGc -5'
29425 5' -64.2 NC_006151.1 + 75386 0.77 0.125923
Target:  5'- -aGUGCacgGCGCGGGG-CGGGUGCGUGc -3'
miRNA:   3'- agCGCGg--CGCGCCCCaGCUCACGCGC- -5'
29425 5' -64.2 NC_006151.1 + 64534 0.77 0.125923
Target:  5'- cCGCgGCCGCGuCGGGGgcggCGAGgccgugGCGCGc -3'
miRNA:   3'- aGCG-CGGCGC-GCCCCa---GCUCa-----CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 86730 0.76 0.138827
Target:  5'- gCGCGCCGcCGCGaGGcCGGcGUGCGCGg -3'
miRNA:   3'- aGCGCGGC-GCGCcCCaGCU-CACGCGC- -5'
29425 5' -64.2 NC_006151.1 + 139641 0.75 0.15666
Target:  5'- -gGCGCCgGCGCgGGGGUCGcGgcggGCGCGc -3'
miRNA:   3'- agCGCGG-CGCG-CCCCAGCuCa---CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 132138 0.75 0.160467
Target:  5'- cUCGCGCCG-GCGGuGGUUGAcgGCGCGc -3'
miRNA:   3'- -AGCGCGGCgCGCC-CCAGCUcaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 114314 0.75 0.164357
Target:  5'- aCGUGCUGCGCgacGGGGgccugcgCGAcGUGCGCGu -3'
miRNA:   3'- aGCGCGGCGCG---CCCCa------GCU-CACGCGC- -5'
29425 5' -64.2 NC_006151.1 + 19273 0.75 0.172392
Target:  5'- cUCGUGgCGCGCGGGGcccacCGGGgccagcgGCGCGg -3'
miRNA:   3'- -AGCGCgGCGCGCCCCa----GCUCa------CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 142005 0.74 0.189518
Target:  5'- -aGCGCgGCGUGGGG-CGGGUGUgGCa -3'
miRNA:   3'- agCGCGgCGCGCCCCaGCUCACG-CGc -5'
29425 5' -64.2 NC_006151.1 + 89881 0.74 0.194028
Target:  5'- aCGCGCCGCucgggcucggcgGUGGGGUCGGcGUcCGCGu -3'
miRNA:   3'- aGCGCGGCG------------CGCCCCAGCU-CAcGCGC- -5'
29425 5' -64.2 NC_006151.1 + 63883 0.73 0.203329
Target:  5'- gCGUGuCCGCGuCGGGGcgcUCGAGcagGCGCGc -3'
miRNA:   3'- aGCGC-GGCGC-GCCCC---AGCUCa--CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 27290 0.73 0.218004
Target:  5'- -aGCGcCCGCGCuuggggggcgugGGGGUCGAG-GCGgGg -3'
miRNA:   3'- agCGC-GGCGCG------------CCCCAGCUCaCGCgC- -5'
29425 5' -64.2 NC_006151.1 + 100038 0.73 0.223093
Target:  5'- -gGCGCuCGCGCacgagcugcacGGGGUCGuGcGCGCGg -3'
miRNA:   3'- agCGCG-GCGCG-----------CCCCAGCuCaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 22999 0.73 0.223093
Target:  5'- cUCG-GCCGCGC-GGGUgGGG-GCGCGg -3'
miRNA:   3'- -AGCgCGGCGCGcCCCAgCUCaCGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.