miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29425 5' -64.2 NC_006151.1 + 2447 0.66 0.530867
Target:  5'- aCGgGCCGCaGCGGGG-CGccgagcccccagcGGUuggccGCGCGg -3'
miRNA:   3'- aGCgCGGCG-CGCCCCaGC-------------UCA-----CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 2603 0.72 0.255779
Target:  5'- gCGCGCgGCGgcagcgggacCGGGGUcCGGGgcccgGCGCGg -3'
miRNA:   3'- aGCGCGgCGC----------GCCCCA-GCUCa----CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 3264 0.68 0.4338
Target:  5'- -gGCGCCGCgGCGcGcGG-CGAuGUGCGCc -3'
miRNA:   3'- agCGCGGCG-CGC-C-CCaGCU-CACGCGc -5'
29425 5' -64.2 NC_006151.1 + 3964 0.69 0.361924
Target:  5'- cCGgGCCGCGCGGcGGccucggCGAGccgGcCGCGg -3'
miRNA:   3'- aGCgCGGCGCGCC-CCa-----GCUCa--C-GCGC- -5'
29425 5' -64.2 NC_006151.1 + 4329 0.71 0.285932
Target:  5'- cCGgGCUGCGCGGcGG-CGAaGgcgGCGCGg -3'
miRNA:   3'- aGCgCGGCGCGCC-CCaGCU-Ca--CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 5238 0.71 0.273546
Target:  5'- -aGCGCCGCGCGGcGGcggCGGGggcccgggGgGCGg -3'
miRNA:   3'- agCGCGGCGCGCC-CCa--GCUCa-------CgCGC- -5'
29425 5' -64.2 NC_006151.1 + 5367 0.68 0.442287
Target:  5'- -gGCGCCG-GCGGGGcugucucugCGGGgGCGCc -3'
miRNA:   3'- agCGCGGCgCGCCCCa--------GCUCaCGCGc -5'
29425 5' -64.2 NC_006151.1 + 5722 0.66 0.559975
Target:  5'- cUGUGCUggugGCGcCGGGGUCcGAGgccGCGCc -3'
miRNA:   3'- aGCGCGG----CGC-GCCCCAG-CUCa--CGCGc -5'
29425 5' -64.2 NC_006151.1 + 8259 0.66 0.522517
Target:  5'- gCGCGCCGgGacgccccucCGGGGgaaaGAGUguccccGCGCGg -3'
miRNA:   3'- aGCGCGGCgC---------GCCCCag--CUCA------CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 9488 0.66 0.522517
Target:  5'- cCGCgGCCGCgGCGuGGGagagCGGG-GCGUGu -3'
miRNA:   3'- aGCG-CGGCG-CGC-CCCa---GCUCaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 10419 0.67 0.477141
Target:  5'- gUGaCGCCGCGgGuGGGcCGAGgccgGCGgGg -3'
miRNA:   3'- aGC-GCGGCGCgC-CCCaGCUCa---CGCgC- -5'
29425 5' -64.2 NC_006151.1 + 10637 0.69 0.412185
Target:  5'- cUCGUGCCgGCGCGGcauccccgcccaggcGG-CGGGggaGCGCGg -3'
miRNA:   3'- -AGCGCGG-CGCGCC---------------CCaGCUCa--CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 10903 0.69 0.408919
Target:  5'- -gGUGCCgGCGCggaccGGGGUCGGGcccacgGCGCc -3'
miRNA:   3'- agCGCGG-CGCG-----CCCCAGCUCa-----CGCGc -5'
29425 5' -64.2 NC_006151.1 + 11683 0.69 0.400825
Target:  5'- cUGCGCC-CGaCGGGGccgCGGGacgGCGCGu -3'
miRNA:   3'- aGCGCGGcGC-GCCCCa--GCUCa--CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 11874 0.69 0.361924
Target:  5'- cUCGCGUCGCgGCGauucGGGccgcaUCGAG-GCGCGu -3'
miRNA:   3'- -AGCGCGGCG-CGC----CCC-----AGCUCaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 14467 0.66 0.559975
Target:  5'- gUUGgGuuGgGCGGGuGggCGGGUGgGCGg -3'
miRNA:   3'- -AGCgCggCgCGCCC-Ca-GCUCACgCGC- -5'
29425 5' -64.2 NC_006151.1 + 15040 0.66 0.559975
Target:  5'- gCGCGUccacggCGCGCGGGGcccCGGcgccuucUGCGCGg -3'
miRNA:   3'- aGCGCG------GCGCGCCCCa--GCUc------ACGCGC- -5'
29425 5' -64.2 NC_006151.1 + 17075 0.68 0.459538
Target:  5'- cCGgGCCGcCGCcGGGUCaGGcGCGCGc -3'
miRNA:   3'- aGCgCGGC-GCGcCCCAGcUCaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 19273 0.75 0.172392
Target:  5'- cUCGUGgCGCGCGGGGcccacCGGGgccagcgGCGCGg -3'
miRNA:   3'- -AGCGCgGCGCGCCCCa----GCUCa------CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 19637 0.66 0.550531
Target:  5'- cCGuCGCCGCGCGc-GUCGAGggugaaguugGCGCc -3'
miRNA:   3'- aGC-GCGGCGCGCccCAGCUCa---------CGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.