miRNA display CGI


Results 21 - 40 of 173 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29425 5' -64.2 NC_006151.1 + 20142 0.68 0.442287
Target:  5'- -gGCGCCGCG-GGGG-CG-GcGCGUGg -3'
miRNA:   3'- agCGCGGCGCgCCCCaGCuCaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 20169 0.66 0.569462
Target:  5'- cCGgGCCGCGCccGGGUCGcggccGGUagaugcgauuccGCGCGc -3'
miRNA:   3'- aGCgCGGCGCGc-CCCAGC-----UCA------------CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 20715 0.69 0.384947
Target:  5'- cCGCGuCCG-GCGGGGcCG-G-GCGCGa -3'
miRNA:   3'- aGCGC-GGCgCGCCCCaGCuCaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 20866 0.78 0.108638
Target:  5'- cUCGCGCguguagcaggCGCGCuuGGGGUCGAG-GCGCa -3'
miRNA:   3'- -AGCGCG----------GCGCG--CCCCAGCUCaCGCGc -5'
29425 5' -64.2 NC_006151.1 + 20981 0.68 0.442287
Target:  5'- gCGCGUCGC-CGGGcaCGAGgacgGCGCu -3'
miRNA:   3'- aGCGCGGCGcGCCCcaGCUCa---CGCGc -5'
29425 5' -64.2 NC_006151.1 + 21580 0.8 0.078545
Target:  5'- -aGgGCCGCGCGGGGUCGAuGgcguacgGCGUGg -3'
miRNA:   3'- agCgCGGCGCGCCCCAGCU-Ca------CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 22999 0.73 0.223093
Target:  5'- cUCG-GCCGCGC-GGGUgGGG-GCGCGg -3'
miRNA:   3'- -AGCgCGGCGCGcCCCAgCUCaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 27173 0.66 0.541137
Target:  5'- -gGCGCCGCGUgucGGGGcgccaGGGggccGCGCa -3'
miRNA:   3'- agCGCGGCGCG---CCCCag---CUCa---CGCGc -5'
29425 5' -64.2 NC_006151.1 + 27224 0.7 0.316767
Target:  5'- gCGCGCCGUGgacgcgcaccuccuCGGGGUCGGGcggGgGCc -3'
miRNA:   3'- aGCGCGGCGC--------------GCCCCAGCUCa--CgCGc -5'
29425 5' -64.2 NC_006151.1 + 27290 0.73 0.218004
Target:  5'- -aGCGcCCGCGCuuggggggcgugGGGGUCGAG-GCGgGg -3'
miRNA:   3'- agCGC-GGCGCG------------CCCCAGCUCaCGCgC- -5'
29425 5' -64.2 NC_006151.1 + 30267 0.71 0.273546
Target:  5'- -gGCGCCacagacagcgGCGCGGGGggaGGGUGUGUa -3'
miRNA:   3'- agCGCGG----------CGCGCCCCag-CUCACGCGc -5'
29425 5' -64.2 NC_006151.1 + 30628 0.69 0.392834
Target:  5'- gCGCGCUGUGCGGG--UGGGUGgGgGa -3'
miRNA:   3'- aGCGCGGCGCGCCCcaGCUCACgCgC- -5'
29425 5' -64.2 NC_006151.1 + 30749 0.68 0.450868
Target:  5'- -aGUGCCGCggGCGGGG-CGGGgGCaGCa -3'
miRNA:   3'- agCGCGGCG--CGCCCCaGCUCaCG-CGc -5'
29425 5' -64.2 NC_006151.1 + 31757 0.7 0.332747
Target:  5'- aCGCGCC-UGCGGcGG-CGGGcGCGCGc -3'
miRNA:   3'- aGCGCGGcGCGCC-CCaGCUCaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 32782 0.69 0.369491
Target:  5'- cCGCgGCCGCGgGGGGcCGAagcgGaCGCGg -3'
miRNA:   3'- aGCG-CGGCGCgCCCCaGCUca--C-GCGC- -5'
29425 5' -64.2 NC_006151.1 + 33127 0.69 0.392834
Target:  5'- gCGUGCCGCGgGccgagugucGGG-CGAGUGCgagGCGg -3'
miRNA:   3'- aGCGCGGCGCgC---------CCCaGCUCACG---CGC- -5'
29425 5' -64.2 NC_006151.1 + 33917 0.67 0.504149
Target:  5'- cCGCGuCCG-GCGGGcGgaUCGAGgcccGCGCGc -3'
miRNA:   3'- aGCGC-GGCgCGCCC-C--AGCUCa---CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 34611 0.66 0.541137
Target:  5'- gCGCGCCgaGCGCGaGGcgCGGGUGgGgCGa -3'
miRNA:   3'- aGCGCGG--CGCGCcCCa-GCUCACgC-GC- -5'
29425 5' -64.2 NC_006151.1 + 35108 0.66 0.528078
Target:  5'- cUCGCGcCCGCGCGaGGGauuuUCGGacaaucucauugGCGCGc -3'
miRNA:   3'- -AGCGC-GGCGCGC-CCC----AGCUca----------CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 37866 0.69 0.408919
Target:  5'- cCGCGCCGCGgacccccgcgcCGGGGaggcgaccgUCGAGgcccucUGCGCc -3'
miRNA:   3'- aGCGCGGCGC-----------GCCCC---------AGCUC------ACGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.