miRNA display CGI


Results 1 - 20 of 173 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29425 5' -64.2 NC_006151.1 + 142005 0.74 0.189518
Target:  5'- -aGCGCgGCGUGGGG-CGGGUGUgGCa -3'
miRNA:   3'- agCGCGgCGCGCCCCaGCUCACG-CGc -5'
29425 5' -64.2 NC_006151.1 + 140367 0.66 0.550531
Target:  5'- cCGCGUCGUcgaGCGcGGcUCGAGcUGCGUGc -3'
miRNA:   3'- aGCGCGGCG---CGC-CCcAGCUC-ACGCGC- -5'
29425 5' -64.2 NC_006151.1 + 139641 0.75 0.15666
Target:  5'- -gGCGCCgGCGCgGGGGUCGcGgcggGCGCGc -3'
miRNA:   3'- agCGCGG-CGCG-CCCCAGCuCa---CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 139167 0.68 0.454325
Target:  5'- cCGCGCCcucguguggaucuuuGUGCuGGcGGUCGGG-GCGCu -3'
miRNA:   3'- aGCGCGG---------------CGCG-CC-CCAGCUCaCGCGc -5'
29425 5' -64.2 NC_006151.1 + 138718 0.86 0.028268
Target:  5'- gCGCGCCGCGCGcGGGUCGuGUacGCGCGc -3'
miRNA:   3'- aGCGCGGCGCGC-CCCAGCuCA--CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 137515 0.7 0.347116
Target:  5'- -gGCGCCGCGcCGGGcGaCGAGgacUGgGCGg -3'
miRNA:   3'- agCGCGGCGC-GCCC-CaGCUC---ACgCGC- -5'
29425 5' -64.2 NC_006151.1 + 137422 0.69 0.361924
Target:  5'- cUCGcCGCCGcCGCGGGGUCcgccucCGCGg -3'
miRNA:   3'- -AGC-GCGGC-GCGCCCCAGcucac-GCGC- -5'
29425 5' -64.2 NC_006151.1 + 137266 0.66 0.54959
Target:  5'- gCGCGCCcggugccCGCGGGcacgcUCGAGgcggccaUGCGCGg -3'
miRNA:   3'- aGCGCGGc------GCGCCCc----AGCUC-------ACGCGC- -5'
29425 5' -64.2 NC_006151.1 + 136985 0.7 0.347116
Target:  5'- cCGCGCCGgGCGGcGGgCGcGcGCGCa -3'
miRNA:   3'- aGCGCGGCgCGCC-CCaGCuCaCGCGc -5'
29425 5' -64.2 NC_006151.1 + 136861 0.7 0.354466
Target:  5'- gCGCGCCGCGUGaccgccGUCGAGgaGCGCc -3'
miRNA:   3'- aGCGCGGCGCGCcc----CAGCUCa-CGCGc -5'
29425 5' -64.2 NC_006151.1 + 136823 0.71 0.273546
Target:  5'- aCGCGCCGCGCGGGcucugCGA---CGCGg -3'
miRNA:   3'- aGCGCGGCGCGCCCca---GCUcacGCGC- -5'
29425 5' -64.2 NC_006151.1 + 136642 0.69 0.377166
Target:  5'- -gGCGCC-CGUGGGGcgcucgccccUCGGGgagcGCGCGg -3'
miRNA:   3'- agCGCGGcGCGCCCC----------AGCUCa---CGCGC- -5'
29425 5' -64.2 NC_006151.1 + 136436 0.67 0.476252
Target:  5'- gCGCacGCCGCGCGcuacGUCGAcgagcgcGUGCGCGc -3'
miRNA:   3'- aGCG--CGGCGCGCcc--CAGCU-------CACGCGC- -5'
29425 5' -64.2 NC_006151.1 + 135902 0.71 0.279684
Target:  5'- gUCGcCGCCGCGacccCGGcGGUCGuGcGCGCGc -3'
miRNA:   3'- -AGC-GCGGCGC----GCC-CCAGCuCaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 135478 0.67 0.477141
Target:  5'- gCGUGuCCGCGCGGGccaggCG-GcGCGCGg -3'
miRNA:   3'- aGCGC-GGCGCGCCCca---GCuCaCGCGC- -5'
29425 5' -64.2 NC_006151.1 + 135360 0.66 0.550531
Target:  5'- -aGcCGCCGCGCGuuGGcCGcGUGCGCc -3'
miRNA:   3'- agC-GCGGCGCGCc-CCaGCuCACGCGc -5'
29425 5' -64.2 NC_006151.1 + 135113 0.68 0.4338
Target:  5'- -gGCGguagCGCGCGGGG-CGGGcUGgGCGg -3'
miRNA:   3'- agCGCg---GCGCGCCCCaGCUC-ACgCGC- -5'
29425 5' -64.2 NC_006151.1 + 134205 0.7 0.325727
Target:  5'- gUCGCGCaGCGCGGGGgCG-GU-CGCa -3'
miRNA:   3'- -AGCGCGgCGCGCCCCaGCuCAcGCGc -5'
29425 5' -64.2 NC_006151.1 + 133779 0.71 0.274155
Target:  5'- aCGCGCCGCcccGCGGGGgaggcgugcagcaucCGGGUGCaCGu -3'
miRNA:   3'- aGCGCGGCG---CGCCCCa--------------GCUCACGcGC- -5'
29425 5' -64.2 NC_006151.1 + 133738 0.66 0.541137
Target:  5'- -gGCGagCGaGUGGGGUCGGGcGCGUGc -3'
miRNA:   3'- agCGCg-GCgCGCCCCAGCUCaCGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.