miRNA display CGI


Results 41 - 60 of 373 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29426 5' -68.5 NC_006151.1 + 123222 0.66 0.347199
Target:  5'- gGUgGCCGCCGGGuuCCGCGCaCgGCgCg -3'
miRNA:   3'- -CAgCGGCGGCUCc-GGCGCG-GgCGgGa -5'
29426 5' -68.5 NC_006151.1 + 17315 0.66 0.347199
Target:  5'- -cCGuCCGCCGGGgggcGCCGCGUCaGCUCg -3'
miRNA:   3'- caGC-GGCGGCUC----CGGCGCGGgCGGGa -5'
29426 5' -68.5 NC_006151.1 + 44965 0.66 0.347199
Target:  5'- cUCGCCucucaccaCCGuuGCCccGCGCCCGUCCUc -3'
miRNA:   3'- cAGCGGc-------GGCucCGG--CGCGGGCGGGA- -5'
29426 5' -68.5 NC_006151.1 + 31610 0.66 0.346481
Target:  5'- -cCGCCGCCuGGGcggggauGCCGCGCCgGCa-- -3'
miRNA:   3'- caGCGGCGG-CUC-------CGGCGCGGgCGgga -5'
29426 5' -68.5 NC_006151.1 + 139645 0.66 0.346481
Target:  5'- -cCGgCGCgGGGGUCgcggcggGCGCgCCGCCCg -3'
miRNA:   3'- caGCgGCGgCUCCGG-------CGCG-GGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 3110 0.66 0.346481
Target:  5'- --gGCCGCCGcggcgcgggucccAGGCCGgGCgcggggCGCCCUc -3'
miRNA:   3'- cagCGGCGGC-------------UCCGGCgCGg-----GCGGGA- -5'
29426 5' -68.5 NC_006151.1 + 106429 0.66 0.345049
Target:  5'- cGUCGCCGacuggaCCGAgGGCCGCuucucggagacggaGCUgugggCGCCCUg -3'
miRNA:   3'- -CAGCGGC------GGCU-CCGGCG--------------CGG-----GCGGGA- -5'
29426 5' -68.5 NC_006151.1 + 11994 0.66 0.340071
Target:  5'- -gCGCCGCUGucuGUgGCGCCCGUCg- -3'
miRNA:   3'- caGCGGCGGCuc-CGgCGCGGGCGGga -5'
29426 5' -68.5 NC_006151.1 + 117600 0.66 0.340071
Target:  5'- -gCGCCGCCGcaguagaccguGGGCuCGCGCgCgagcguGCCCa -3'
miRNA:   3'- caGCGGCGGC-----------UCCG-GCGCGgG------CGGGa -5'
29426 5' -68.5 NC_006151.1 + 106653 0.66 0.340071
Target:  5'- -aCGCCGCggcgcacgugcgCGAGGCCGCGgC-GCUCg -3'
miRNA:   3'- caGCGGCG------------GCUCCGGCGCgGgCGGGa -5'
29426 5' -68.5 NC_006151.1 + 64114 0.66 0.340071
Target:  5'- gGUCGUgGcCCGGcGGUggCGCGCCCGUCUc -3'
miRNA:   3'- -CAGCGgC-GGCU-CCG--GCGCGGGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 11316 0.66 0.340071
Target:  5'- --gGCCGCCGcgauaccgcgcGGGCgauacCGCGCgggCCGCCCg -3'
miRNA:   3'- cagCGGCGGC-----------UCCG-----GCGCG---GGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 95861 0.66 0.340071
Target:  5'- uGUCGCUGuuGAuGGCCGCcGUCaucgaGUCCa -3'
miRNA:   3'- -CAGCGGCggCU-CCGGCG-CGGg----CGGGa -5'
29426 5' -68.5 NC_006151.1 + 136103 0.66 0.339364
Target:  5'- aUCGCgGUCGGGcGCCGCGggcugacCUCGCUCUu -3'
miRNA:   3'- cAGCGgCGGCUC-CGGCGC-------GGGCGGGA- -5'
29426 5' -68.5 NC_006151.1 + 76224 0.66 0.339364
Target:  5'- -gUGCCGUCGAGGUUcuCGCCCgagaugaGCCCg -3'
miRNA:   3'- caGCGGCGGCUCCGGc-GCGGG-------CGGGa -5'
29426 5' -68.5 NC_006151.1 + 84339 0.66 0.333049
Target:  5'- --gGCCucGCCGAGuaCGuCGCCgGCCCg -3'
miRNA:   3'- cagCGG--CGGCUCcgGC-GCGGgCGGGa -5'
29426 5' -68.5 NC_006151.1 + 59817 0.66 0.333049
Target:  5'- cUCGCCGCUGuccgcgaugucGGCCGCcaccgGCCgGUCCg -3'
miRNA:   3'- cAGCGGCGGCu----------CCGGCG-----CGGgCGGGa -5'
29426 5' -68.5 NC_006151.1 + 139929 0.66 0.333049
Target:  5'- cUCGUCGCCGuGGGCCGCcGUCCucgaguucggcGCCg- -3'
miRNA:   3'- cAGCGGCGGC-UCCGGCG-CGGG-----------CGGga -5'
29426 5' -68.5 NC_006151.1 + 118900 0.66 0.333049
Target:  5'- --gGCCGCCGGcGGCCucgaGCGCCgcauggCGUCCg -3'
miRNA:   3'- cagCGGCGGCU-CCGG----CGCGG------GCGGGa -5'
29426 5' -68.5 NC_006151.1 + 31950 0.66 0.332353
Target:  5'- -cCGCgugaugaCGCCGGGGacgcgggaCGUGCCCGCCg- -3'
miRNA:   3'- caGCG-------GCGGCUCCg-------GCGCGGGCGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.