miRNA display CGI


Results 21 - 40 of 373 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29426 5' -68.5 NC_006151.1 + 115653 0.66 0.354433
Target:  5'- uGUCGCgGCCGAuGGUCGUcacgguGgCCGCCa- -3'
miRNA:   3'- -CAGCGgCGGCU-CCGGCG------CgGGCGGga -5'
29426 5' -68.5 NC_006151.1 + 122954 0.66 0.354433
Target:  5'- -gCGCCGCgGGGGgCGCGgaCGCCg- -3'
miRNA:   3'- caGCGGCGgCUCCgGCGCggGCGGga -5'
29426 5' -68.5 NC_006151.1 + 133379 0.66 0.354433
Target:  5'- gGUgGCgGCCGGGGCgGCGgCCGgggCCg -3'
miRNA:   3'- -CAgCGgCGGCUCCGgCGCgGGCg--GGa -5'
29426 5' -68.5 NC_006151.1 + 66743 0.66 0.354433
Target:  5'- uGUCGCgGCgcuccuuccgCGAcGCCGCGacggCCGCCCUc -3'
miRNA:   3'- -CAGCGgCG----------GCUcCGGCGCg---GGCGGGA- -5'
29426 5' -68.5 NC_006151.1 + 84186 0.66 0.354433
Target:  5'- cUCGCCGCC---GCCGUGCCC-CCg- -3'
miRNA:   3'- cAGCGGCGGcucCGGCGCGGGcGGga -5'
29426 5' -68.5 NC_006151.1 + 96835 0.66 0.354433
Target:  5'- -cCGCCaaugggggaaagGgCGGGGaaaCCGCGCCCGCCg- -3'
miRNA:   3'- caGCGG------------CgGCUCC---GGCGCGGGCGGga -5'
29426 5' -68.5 NC_006151.1 + 108052 0.66 0.354433
Target:  5'- --aGCCGCCGAcccgGGCCcagaCGCagaCCGCCCc -3'
miRNA:   3'- cagCGGCGGCU----CCGGc---GCG---GGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 86180 0.66 0.353705
Target:  5'- cGUgGCCGCCGcgcugcccccggcGGGCC-CGC-UGCCCa -3'
miRNA:   3'- -CAgCGGCGGC-------------UCCGGcGCGgGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 93566 0.66 0.352252
Target:  5'- -cCGCCGCgGGGGCgggCGCGCCaaagagcgggcucgCGCCg- -3'
miRNA:   3'- caGCGGCGgCUCCG---GCGCGG--------------GCGGga -5'
29426 5' -68.5 NC_006151.1 + 36371 0.66 0.352252
Target:  5'- cUCGCagcggcagagGCCGGGGCCcccggcggccccggGCGCUCGUCCc -3'
miRNA:   3'- cAGCGg---------CGGCUCCGG--------------CGCGGGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 46110 0.66 0.349358
Target:  5'- -gCGCCacgaggagGCCGAagggcagGGCuccgggucugggucuCGCGCCCGCCCc -3'
miRNA:   3'- caGCGG--------CGGCU-------CCG---------------GCGCGGGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 96314 0.66 0.347199
Target:  5'- -gCGCCGaCUGcAGGCCGCGCgCGUa-- -3'
miRNA:   3'- caGCGGC-GGC-UCCGGCGCGgGCGgga -5'
29426 5' -68.5 NC_006151.1 + 96613 0.66 0.347199
Target:  5'- -gCGCCGacgucgugcCCGAGGgCGCGCagCGCCUc -3'
miRNA:   3'- caGCGGC---------GGCUCCgGCGCGg-GCGGGa -5'
29426 5' -68.5 NC_006151.1 + 101647 0.66 0.347199
Target:  5'- uUCGCCGCCGuGcCCGCGCUCuaCg- -3'
miRNA:   3'- cAGCGGCGGCuCcGGCGCGGGcgGga -5'
29426 5' -68.5 NC_006151.1 + 110834 0.66 0.347199
Target:  5'- --gGCCGaCCGuGGGCCGgGCCCaGCUg- -3'
miRNA:   3'- cagCGGC-GGC-UCCGGCgCGGG-CGGga -5'
29426 5' -68.5 NC_006151.1 + 112167 0.66 0.347199
Target:  5'- uGUUGaCgGCCGcGGCgaagcgauCGCGCCgCGCCCg -3'
miRNA:   3'- -CAGC-GgCGGCuCCG--------GCGCGG-GCGGGa -5'
29426 5' -68.5 NC_006151.1 + 123222 0.66 0.347199
Target:  5'- gGUgGCCGCCGGGuuCCGCGCaCgGCgCg -3'
miRNA:   3'- -CAgCGGCGGCUCc-GGCGCG-GgCGgGa -5'
29426 5' -68.5 NC_006151.1 + 17315 0.66 0.347199
Target:  5'- -cCGuCCGCCGGGgggcGCCGCGUCaGCUCg -3'
miRNA:   3'- caGC-GGCGGCUC----CGGCGCGGgCGGGa -5'
29426 5' -68.5 NC_006151.1 + 44965 0.66 0.347199
Target:  5'- cUCGCCucucaccaCCGuuGCCccGCGCCCGUCCUc -3'
miRNA:   3'- cAGCGGc-------GGCucCGG--CGCGGGCGGGA- -5'
29426 5' -68.5 NC_006151.1 + 64623 0.66 0.347199
Target:  5'- -gCGCCGCC--GGCCGCGgggcgcggcgcCCCGCgCa -3'
miRNA:   3'- caGCGGCGGcuCCGGCGC-----------GGGCGgGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.