miRNA display CGI


Results 21 - 40 of 373 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29426 5' -68.5 NC_006151.1 + 4127 0.76 0.076656
Target:  5'- -cUGCCGCCGcucGGCCGgGCCgGCCCc -3'
miRNA:   3'- caGCGGCGGCu--CCGGCgCGGgCGGGa -5'
29426 5' -68.5 NC_006151.1 + 97561 0.76 0.076656
Target:  5'- cGUCGCCGCCGAGGCgcagcuCGCGguCCaCGUCCa -3'
miRNA:   3'- -CAGCGGCGGCUCCG------GCGC--GG-GCGGGa -5'
29426 5' -68.5 NC_006151.1 + 127554 0.75 0.078579
Target:  5'- cGUCGUCGUCGuGGCCGcCGCCgGCgCCUc -3'
miRNA:   3'- -CAGCGGCGGCuCCGGC-GCGGgCG-GGA- -5'
29426 5' -68.5 NC_006151.1 + 118352 0.75 0.078579
Target:  5'- cUCGCgCGCCugcGAGGCgGCGCgCGCCCg -3'
miRNA:   3'- cAGCG-GCGG---CUCCGgCGCGgGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 113210 0.75 0.080547
Target:  5'- -aCGCCGCCGAGGa-GCGCCgGCaCCg -3'
miRNA:   3'- caGCGGCGGCUCCggCGCGGgCG-GGa -5'
29426 5' -68.5 NC_006151.1 + 39120 0.75 0.082562
Target:  5'- --aGcCCGCCGAGGgcgccCCGCGCCCGgCCUg -3'
miRNA:   3'- cagC-GGCGGCUCC-----GGCGCGGGCgGGA- -5'
29426 5' -68.5 NC_006151.1 + 84789 0.75 0.082562
Target:  5'- -gCGCCGCCGAGGagGCGCCCGaggcgaCCg -3'
miRNA:   3'- caGCGGCGGCUCCggCGCGGGCg-----GGa -5'
29426 5' -68.5 NC_006151.1 + 130641 0.75 0.084417
Target:  5'- -gCGCCGCCGAGGCCGCcugcggcgugaacGUCaguGCCCg -3'
miRNA:   3'- caGCGGCGGCUCCGGCG-------------CGGg--CGGGa -5'
29426 5' -68.5 NC_006151.1 + 16892 0.75 0.084626
Target:  5'- cUCG-CGuCCGuuGCCGCGCCCGCCCc -3'
miRNA:   3'- cAGCgGC-GGCucCGGCGCGGGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 19761 0.75 0.086738
Target:  5'- gGUCGCCGUCGAGGUcauCGuCGCCgGCCUc -3'
miRNA:   3'- -CAGCGGCGGCUCCG---GC-GCGGgCGGGa -5'
29426 5' -68.5 NC_006151.1 + 38290 0.75 0.088901
Target:  5'- --gGCuCGCCGAGGCCGcCGCgCgGCCCg -3'
miRNA:   3'- cagCG-GCGGCUCCGGC-GCG-GgCGGGa -5'
29426 5' -68.5 NC_006151.1 + 3608 0.75 0.088901
Target:  5'- cGUCGUCGCgGuGGCCGUGgCCGUCCc -3'
miRNA:   3'- -CAGCGGCGgCuCCGGCGCgGGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 90691 0.75 0.088901
Target:  5'- -cCGCgGCgGGGGCggcggaCGCGCCCGCCCc -3'
miRNA:   3'- caGCGgCGgCUCCG------GCGCGGGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 109117 0.75 0.091115
Target:  5'- --aGCCGCCG-GcCCGCGCCCGCCg- -3'
miRNA:   3'- cagCGGCGGCuCcGGCGCGGGCGGga -5'
29426 5' -68.5 NC_006151.1 + 135810 0.75 0.091115
Target:  5'- --aGCgCGCCGAGGCCgagcuuuuaGCGCgCCGCCCc -3'
miRNA:   3'- cagCG-GCGGCUCCGG---------CGCG-GGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 99520 0.74 0.098074
Target:  5'- -gCGCCaCUGcauGGcGCCGCGCCCGCCCa -3'
miRNA:   3'- caGCGGcGGC---UC-CGGCGCGGGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 86313 0.74 0.098074
Target:  5'- -cCGCaGCUgGGGGCCGUGCUCGCCCg -3'
miRNA:   3'- caGCGgCGG-CUCCGGCGCGGGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 39932 0.74 0.105533
Target:  5'- -cCGaCGCCGAGGCCGC-CCCGCUg- -3'
miRNA:   3'- caGCgGCGGCUCCGGCGcGGGCGGga -5'
29426 5' -68.5 NC_006151.1 + 18432 0.74 0.108136
Target:  5'- --gGCCGCCGGcGGgCGuCGCCCGCCUc -3'
miRNA:   3'- cagCGGCGGCU-CCgGC-GCGGGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 10490 0.74 0.108136
Target:  5'- --aGCCGCCc-GGCgCGCGCCCGCCg- -3'
miRNA:   3'- cagCGGCGGcuCCG-GCGCGGGCGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.