miRNA display CGI


Results 1 - 20 of 373 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29426 5' -68.5 NC_006151.1 + 97923 1.06 0.000383
Target:  5'- cGUCGCCGCCGAGGCCGCGCCCGCCCUc -3'
miRNA:   3'- -CAGCGGCGGCUCCGGCGCGGGCGGGA- -5'
29426 5' -68.5 NC_006151.1 + 87513 0.84 0.016399
Target:  5'- -cCGCCGCCccGGCCGCGCCCGCCUc -3'
miRNA:   3'- caGCGGCGGcuCCGGCGCGGGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 118323 0.8 0.038966
Target:  5'- -gUGCCcCCGAGcagcGCCGCGCCCGCCCUc -3'
miRNA:   3'- caGCGGcGGCUC----CGGCGCGGGCGGGA- -5'
29426 5' -68.5 NC_006151.1 + 36099 0.79 0.042034
Target:  5'- -aCGCCGCCGAGGCCGaGgCCGCCg- -3'
miRNA:   3'- caGCGGCGGCUCCGGCgCgGGCGGga -5'
29426 5' -68.5 NC_006151.1 + 65773 0.79 0.042034
Target:  5'- cGUCGCCGCCGGcGGCgGCGauggcgCCGCCCg -3'
miRNA:   3'- -CAGCGGCGGCU-CCGgCGCg-----GGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 87447 0.78 0.046495
Target:  5'- -cCGCCGCCGcGGCCGCcCCCGCuCCg -3'
miRNA:   3'- caGCGGCGGCuCCGGCGcGGGCG-GGa -5'
29426 5' -68.5 NC_006151.1 + 60676 0.78 0.051936
Target:  5'- cGUCGCCGCCGccGuccucccgcgcgcccGCCGCGCCCGCCg- -3'
miRNA:   3'- -CAGCGGCGGCu-C---------------CGGCGCGGGCGGga -5'
29426 5' -68.5 NC_006151.1 + 18747 0.78 0.052592
Target:  5'- -cCGCCGCCGGGGCCccacgggGUGCCCgggGCCCg -3'
miRNA:   3'- caGCGGCGGCUCCGG-------CGCGGG---CGGGa -5'
29426 5' -68.5 NC_006151.1 + 132858 0.78 0.054064
Target:  5'- --gGCCGgcCCGGGGCCGCGCCC-CCCa -3'
miRNA:   3'- cagCGGC--GGCUCCGGCGCGGGcGGGa -5'
29426 5' -68.5 NC_006151.1 + 78166 0.78 0.054064
Target:  5'- -cCGCCGUgguCGAGGCCGUGUCCGCCg- -3'
miRNA:   3'- caGCGGCG---GCUCCGGCGCGGGCGGga -5'
29426 5' -68.5 NC_006151.1 + 5733 0.78 0.054064
Target:  5'- -gCGCCGggguCCGAGGCCGCGCCgccgGCCCg -3'
miRNA:   3'- caGCGGC----GGCUCCGGCGCGGg---CGGGa -5'
29426 5' -68.5 NC_006151.1 + 117861 0.77 0.055437
Target:  5'- -cCGCCGCCGAcGUCGCGUUCGCCCc -3'
miRNA:   3'- caGCGGCGGCUcCGGCGCGGGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 130908 0.77 0.061274
Target:  5'- cGUCGCCGUCGucgguGGCCGgGCCCGCg-- -3'
miRNA:   3'- -CAGCGGCGGCu----CCGGCgCGGGCGgga -5'
29426 5' -68.5 NC_006151.1 + 17080 0.77 0.061274
Target:  5'- -cCGCCGCCGggucAGGCgCGCGCCCGUCg- -3'
miRNA:   3'- caGCGGCGGC----UCCG-GCGCGGGCGGga -5'
29426 5' -68.5 NC_006151.1 + 39972 0.77 0.064411
Target:  5'- cGUCGCCGCCGcGGgCGC-CCCGCCg- -3'
miRNA:   3'- -CAGCGGCGGCuCCgGCGcGGGCGGga -5'
29426 5' -68.5 NC_006151.1 + 8290 0.77 0.064411
Target:  5'- uGUCcCCGCgCGGGcGCCGCGuCCCGCCCc -3'
miRNA:   3'- -CAGcGGCG-GCUC-CGGCGC-GGGCGGGa -5'
29426 5' -68.5 NC_006151.1 + 1679 0.77 0.064411
Target:  5'- -cCGCCGCCGAGcccuccGCCGCGgCCGCCg- -3'
miRNA:   3'- caGCGGCGGCUC------CGGCGCgGGCGGga -5'
29426 5' -68.5 NC_006151.1 + 81344 0.76 0.067703
Target:  5'- cGUCGCCGCC---GCCGCGCCCgggGCCCc -3'
miRNA:   3'- -CAGCGGCGGcucCGGCGCGGG---CGGGa -5'
29426 5' -68.5 NC_006151.1 + 36811 0.76 0.069409
Target:  5'- cGUCGCCGUCGAGaCCGuCGCCCgcgGCCCc -3'
miRNA:   3'- -CAGCGGCGGCUCcGGC-GCGGG---CGGGa -5'
29426 5' -68.5 NC_006151.1 + 85627 0.76 0.076467
Target:  5'- -cCGCCGCCGcgcggcgccagcgGGGaCGCGCCCGCCUc -3'
miRNA:   3'- caGCGGCGGC-------------UCCgGCGCGGGCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.